Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.84□□□□□ -0.51
HLA-DMBP28068 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
HLA-DMBP28068 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
HLA-DMBP28068 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AC013726.1-201ENST00000563747 2285 ntBASIC11.83□□□□□ -0.52
HLA-DMBP28068 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 GPS2P2-201ENST00000430745 888 ntBASIC11.83□□□□□ -0.52
HLA-DMBP28068 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 SUOX-214ENST00000551841 906 ntTSL 3 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AC093512.1-201ENST00000617969 520 ntBASIC11.83□□□□□ -0.52
HLA-DMBP28068 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AC026748.1-201ENST00000624349 3251 ntBASIC11.83□□□□□ -0.52
HLA-DMBP28068 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DMBP28068 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 LINC01101-201ENST00000622953 1884 ntBASIC11.83□□□□□ -0.52
HLA-DMBP28068 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DMBP28068 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 FGD5P1-202ENST00000614866 2498 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 AC015656.1-201ENST00000624209 3578 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms