Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A1P02462 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.44■□□□□ 0.54
COL4A1P02462 AL805961.1-203ENST00000641078 1258 ntBASIC18.44■□□□□ 0.54
COL4A1P02462 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A1P02462 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL4A1P02462 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
COL4A1P02462 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A1P02462 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.43■□□□□ 0.54
COL4A1P02462 KRT18P36-201ENST00000411618 1276 ntBASIC18.43■□□□□ 0.54
COL4A1P02462 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 AC069218.1-201ENST00000435269 762 ntBASIC18.43■□□□□ 0.54
COL4A1P02462 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL4A1P02462 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.43■□□□□ 0.54
COL4A1P02462 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.43■□□□□ 0.54
COL4A1P02462 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.43■□□□□ 0.54
COL4A1P02462 U62317.3-201ENST00000608319 855 ntBASIC18.43■□□□□ 0.54
COL4A1P02462 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.43■□□□□ 0.54
COL4A1P02462 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A1P02462 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A1P02462 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL4A1P02462 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC18.42■□□□□ 0.54
COL4A1P02462 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.42■□□□□ 0.54
COL4A1P02462 CU633904.3-201ENST00000624042 1029 ntBASIC18.42■□□□□ 0.54
COL4A1P02462 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.42■□□□□ 0.54
COL4A1P02462 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL4A1P02462 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.42■□□□□ 0.54
COL4A1P02462 AC136759.1-202ENST00000530858 2194 ntBASIC18.42■□□□□ 0.54
COL4A1P02462 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A1P02462 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A1P02462 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A1P02462 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A1P02462 AL157813.1-201ENST00000612996 587 ntBASIC18.41■□□□□ 0.54
COL4A1P02462 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A1P02462 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A1P02462 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A1P02462 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A1P02462 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A1P02462 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.41■□□□□ 0.54
COL4A1P02462 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A1P02462 AC092978.1-202ENST00000637590 1327 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms