Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.79■□□□□ 0.28
RNF40O75150 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 AL589739.1-201ENST00000607720 493 ntBASIC16.79■□□□□ 0.28
RNF40O75150 SPTSSB-204ENST00000617024 1292 ntBASIC16.79■□□□□ 0.28
RNF40O75150 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RNF40O75150 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 FAM220BP-201ENST00000377689 816 ntBASIC16.78■□□□□ 0.28
RNF40O75150 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.78■□□□□ 0.28
RNF40O75150 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.78■□□□□ 0.28
RNF40O75150 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.78■□□□□ 0.28
RNF40O75150 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 AC008738.7-201ENST00000609744 511 ntBASIC16.78■□□□□ 0.28
RNF40O75150 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF40O75150 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 AL365209.1-201ENST00000624418 6473 ntBASIC16.78■□□□□ 0.28
RNF40O75150 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF40O75150 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF40O75150 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF40O75150 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 AC087499.5-201ENST00000452760 1342 ntBASIC16.77■□□□□ 0.28
RNF40O75150 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF40O75150 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
RNF40O75150 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
RNF40O75150 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
RNF40O75150 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF40O75150 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF40O75150 AC007274.1-201ENST00000439805 662 ntBASIC16.77■□□□□ 0.28
RNF40O75150 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF40O75150 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF40O75150 AC009407.1-201ENST00000568958 598 ntBASIC16.77■□□□□ 0.28
RNF40O75150 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF40O75150 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.77■□□□□ 0.28
RNF40O75150 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.77■□□□□ 0.28
RNF40O75150 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF40O75150 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF40O75150 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.77■□□□□ 0.28
RNF40O75150 AC010326.4-201ENST00000604665 891 ntBASIC16.77■□□□□ 0.28
RNF40O75150 RN7SL828P-201ENST00000607615 303 ntBASIC16.77■□□□□ 0.28
RNF40O75150 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF40O75150 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
RNF40O75150 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF40O75150 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms