Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AC027796.2-201ENST00000575326 344 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AC004835.2-201ENST00000603762 682 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AC027612.4-201ENST00000605371 583 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 MIR6080-201ENST00000617359 66 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 SPDYE17-201ENST00000412399 783 ntBASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 TARDBPP1-201ENST00000442013 1203 ntBASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AC023141.5-201ENST00000458585 616 ntBASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AC007967.4-201ENST00000614700 386 ntBASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM56Q9BRZ2 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRIM56Q9BRZ2 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 KRT18P64-201ENST00000434946 1219 ntBASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRIM56Q9BRZ2 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms