Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HPS3Q969F9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.12■□□□□ 0.33
HPS3Q969F9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.12■□□□□ 0.33
HPS3Q969F9 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HPS3Q969F9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HPS3Q969F9 ZBED1P1-201ENST00000502364 1930 ntBASIC17.11■□□□□ 0.33
HPS3Q969F9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HPS3Q969F9 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HPS3Q969F9 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 CICP23-201ENST00000605013 2741 ntBASIC17.11■□□□□ 0.33
HPS3Q969F9 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 SPTLC1P1-201ENST00000447199 261 ntBASIC17.11■□□□□ 0.33
HPS3Q969F9 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.11■□□□□ 0.33
HPS3Q969F9 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.11■□□□□ 0.33
HPS3Q969F9 RNA5SP421-201ENST00000516864 134 ntBASIC17.11■□□□□ 0.33
HPS3Q969F9 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.11■□□□□ 0.33
HPS3Q969F9 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.11■□□□□ 0.33
HPS3Q969F9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.11■□□□□ 0.33
HPS3Q969F9 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HPS3Q969F9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.11■□□□□ 0.33
HPS3Q969F9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.11■□□□□ 0.33
HPS3Q969F9 ACE3P-201ENST00000423435 1973 ntBASIC17.11■□□□□ 0.33
HPS3Q969F9 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.11■□□□□ 0.33
HPS3Q969F9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HPS3Q969F9 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.1■□□□□ 0.33
HPS3Q969F9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 GHSR-202ENST00000427970 912 ntBASIC17.1■□□□□ 0.33
HPS3Q969F9 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.1■□□□□ 0.33
HPS3Q969F9 BCRP1-201ENST00000444246 691 ntBASIC17.1■□□□□ 0.33
HPS3Q969F9 TSPY16P-201ENST00000449843 468 ntBASIC17.1■□□□□ 0.33
HPS3Q969F9 FAM86LP-201ENST00000478302 853 ntBASIC17.1■□□□□ 0.33
HPS3Q969F9 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.1■□□□□ 0.33
HPS3Q969F9 RARRES2P5-201ENST00000564013 466 ntBASIC17.1■□□□□ 0.33
HPS3Q969F9 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
HPS3Q969F9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HPS3Q969F9 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.1■□□□□ 0.33
HPS3Q969F9 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HPS3Q969F9 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms