Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.67□□□□□ -0.06
CLK1P49759 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLK1P49759 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
CLK1P49759 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.67□□□□□ -0.06
CLK1P49759 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLK1P49759 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
CLK1P49759 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.67□□□□□ -0.06
CLK1P49759 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
CLK1P49759 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLK1P49759 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLK1P49759 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLK1P49759 LINC00552-201ENST00000625151 2579 ntBASIC14.67□□□□□ -0.06
CLK1P49759 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLK1P49759 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLK1P49759 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 FOXO1B-201ENST00000504678 1527 ntBASIC14.66□□□□□ -0.06
CLK1P49759 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CLK1P49759 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.66□□□□□ -0.06
CLK1P49759 AC004967.1-201ENST00000453589 447 ntBASIC14.66□□□□□ -0.06
CLK1P49759 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.66□□□□□ -0.06
CLK1P49759 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.66□□□□□ -0.06
CLK1P49759 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.66□□□□□ -0.06
CLK1P49759 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.66□□□□□ -0.06
CLK1P49759 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 AC023511.2-201ENST00000618803 211 ntBASIC14.66□□□□□ -0.06
CLK1P49759 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CLK1P49759 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLK1P49759 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLK1P49759 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 MIR1233-2-201ENST00000408138 82 ntBASIC14.65□□□□□ -0.06
CLK1P49759 MIR1233-1-201ENST00000408722 82 ntBASIC14.65□□□□□ -0.06
CLK1P49759 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLK1P49759 AL627223.1-201ENST00000416693 442 ntBASIC14.65□□□□□ -0.06
CLK1P49759 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.65□□□□□ -0.06
CLK1P49759 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.65□□□□□ -0.06
CLK1P49759 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLK1P49759 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.65□□□□□ -0.06
CLK1P49759 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms