Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
USF1P22415 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
USF1P22415 BNIP3P1-202ENST00000550043 1585 ntBASIC13.19□□□□□ -0.3
USF1P22415 AL136379.1-201ENST00000623471 2642 ntBASIC13.19□□□□□ -0.3
USF1P22415 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.19□□□□□ -0.3
USF1P22415 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.19□□□□□ -0.3
USF1P22415 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
USF1P22415 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
USF1P22415 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
USF1P22415 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.19□□□□□ -0.3
USF1P22415 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
USF1P22415 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.19□□□□□ -0.3
USF1P22415 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
USF1P22415 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.18□□□□□ -0.3
USF1P22415 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
USF1P22415 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
USF1P22415 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.18□□□□□ -0.3
USF1P22415 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
USF1P22415 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.18□□□□□ -0.3
USF1P22415 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.18□□□□□ -0.3
USF1P22415 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
USF1P22415 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 PDIA3P1-201ENST00000471856 1510 ntBASIC13.18□□□□□ -0.3
USF1P22415 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.18□□□□□ -0.3
USF1P22415 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
USF1P22415 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
USF1P22415 ANKRD19P-201ENST00000338192 862 ntBASIC13.17□□□□□ -0.3
USF1P22415 FAM86MP-201ENST00000340703 885 ntBASIC13.17□□□□□ -0.3
USF1P22415 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 TOMM22P5-201ENST00000416399 439 ntBASIC13.17□□□□□ -0.3
USF1P22415 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 AL355864.2-201ENST00000447420 863 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms