Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHGA1Q9Y5H4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 AC103702.1-201ENST00000548801 2630 ntBASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 COX5BP1-201ENST00000507622 393 ntBASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 AC007663.3-201ENST00000609632 465 ntBASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ENPP7P14-201ENST00000621765 1040 ntBASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDHGA1Q9Y5H4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.83□□□□□ -0.03
PCDHGA1Q9Y5H4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.83□□□□□ -0.03
PCDHGA1Q9Y5H4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.83□□□□□ -0.03
PCDHGA1Q9Y5H4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PCDHGA1Q9Y5H4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
PCDHGA1Q9Y5H4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 GGCT-203ENST00000409144 836 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AC016700.1-201ENST00000429424 312 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AL133466.1-201ENST00000447582 150 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM198B-204ENST00000484016 896 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 CHMP4BP1-201ENST00000556017 588 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 MIR4722-201ENST00000578292 60 ntBASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms