Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 OR2K2-202ENST00000374428 1038 ntBASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 RPL8P2-201ENST00000430538 502 ntBASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 AC005632.3-201ENST00000605544 308 ntBASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SMC1BQ8NDV3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC024293.1-201ENST00000467930 498 ntBASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC244250.3-201ENST00000620749 366 ntBASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 AC092299.1-201ENST00000632679 757 ntBASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMC1BQ8NDV3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 CAP2P1-201ENST00000557743 1390 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 BCAS2P2-201ENST00000425064 674 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms