Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 BET1L-202ENST00000332865 533 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 HMGA1P7-201ENST00000406908 502 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 ELK2BP-201ENST00000415014 1224 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 RPS15P9-201ENST00000494093 319 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA3P55318 FAM86EP-206ENST00000510506 987 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 NMU-205ENST00000511469 756 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA3P55318 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA3P55318 AC243562.2-201ENST00000561247 970 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 AC002347.1-201ENST00000569543 541 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC11.72□□□□□ -0.53
FOXA3P55318 MIR3180-1-201ENST00000580374 94 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 MIR3180-3-201ENST00000584616 94 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 AC006557.2-201ENST00000592985 1240 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC11.72□□□□□ -0.53
FOXA3P55318 MTDHP4-201ENST00000600287 670 ntBASIC11.72□□□□□ -0.53
FOXA3P55318 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
FOXA3P55318 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA3P55318 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA3P55318 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.72□□□□□ -0.53
FOXA3P55318 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 APP-205ENST00000358918 2366 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
FOXA3P55318 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.71□□□□□ -0.53
FOXA3P55318 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 AC004899.2-201ENST00000622993 3860 ntBASIC11.71□□□□□ -0.53
FOXA3P55318 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
FOXA3P55318 AC211429.1-201ENST00000415277 523 ntBASIC11.71□□□□□ -0.53
FOXA3P55318 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 CFL1-202ENST00000524553 860 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.71□□□□□ -0.53
FOXA3P55318 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.71□□□□□ -0.53
FOXA3P55318 IGHV3OR16-7-201ENST00000604106 360 ntBASIC11.71□□□□□ -0.53
FOXA3P55318 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA3P55318 AC069148.1-201ENST00000608741 768 ntBASIC11.71□□□□□ -0.53
FOXA3P55318 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC11.71□□□□□ -0.53
FOXA3P55318 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA3P55318 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms