Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.66■□□□□ 0.1
VIMP08670 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.66■□□□□ 0.1
VIMP08670 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.66■□□□□ 0.1
VIMP08670 AC002347.1-201ENST00000569543 541 ntBASIC15.66■□□□□ 0.1
VIMP08670 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.66■□□□□ 0.1
VIMP08670 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VIMP08670 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.66■□□□□ 0.1
VIMP08670 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.66■□□□□ 0.1
VIMP08670 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 AC073439.1-201ENST00000624121 1774 ntBASIC15.65■□□□□ 0.1
VIMP08670 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 AL031595.1-201ENST00000623969 4709 ntBASIC15.65■□□□□ 0.1
VIMP08670 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
VIMP08670 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.65■□□□□ 0.1
VIMP08670 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 MIR3180-1-201ENST00000580374 94 ntBASIC15.65■□□□□ 0.1
VIMP08670 MIR3180-3-201ENST00000584616 94 ntBASIC15.65■□□□□ 0.1
VIMP08670 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 AC092135.3-201ENST00000624151 1846 ntBASIC15.65■□□□□ 0.1
VIMP08670 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
VIMP08670 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VIMP08670 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VIMP08670 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC15.65■□□□□ 0.1
VIMP08670 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
VIMP08670 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.64■□□□□ 0.09
VIMP08670 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms