Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AC098614.1-201ENST00000368528 745 ntBASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 RN7SL692P-201ENST00000464677 288 ntBASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 ELK1P1-201ENST00000485699 580 ntBASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 AL596325.1-201ENST00000563991 1082 ntBASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 RPL13AP25-201ENST00000484130 612 ntBASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 CTBP2P3-201ENST00000585629 1255 ntBASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 BRI3BPP1-201ENST00000594224 787 ntBASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM39Q9HCM9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AC105250.1-201ENST00000509378 2057 ntBASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms