Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AC211486.1-202ENST00000416371 468 ntBASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AC211476.1-201ENST00000503899 468 ntBASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AC026150.2-201ENST00000564693 1156 ntBASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 AC026979.3-201ENST00000607315 403 ntBASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM56Q9BRZ2 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 AL009178.2-201ENST00000597278 2719 ntBASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM56Q9BRZ2 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 CICP11-201ENST00000434745 2827 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms