Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SOX2P48431 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.75□□□□□ -0.21
SOX2P48431 AC034105.1-201ENST00000563488 319 ntBASIC13.75□□□□□ -0.21
SOX2P48431 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.75□□□□□ -0.21
SOX2P48431 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX2P48431 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.75□□□□□ -0.21
SOX2P48431 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX2P48431 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX2P48431 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SOX2P48431 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
SOX2P48431 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 AC005912.2-201ENST00000619492 2400 ntBASIC13.75□□□□□ -0.21
SOX2P48431 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
SOX2P48431 AC126335.2-201ENST00000623362 4637 ntBASIC13.75□□□□□ -0.21
SOX2P48431 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SOX2P48431 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX2P48431 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 PTENP1-202ENST00000532280 3996 ntBASIC13.74□□□□□ -0.21
SOX2P48431 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.74□□□□□ -0.21
SOX2P48431 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.74□□□□□ -0.21
SOX2P48431 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 AL135744.1-201ENST00000565098 629 ntBASIC13.74□□□□□ -0.21
SOX2P48431 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.74□□□□□ -0.21
SOX2P48431 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.74□□□□□ -0.21
SOX2P48431 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SOX2P48431 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX2P48431 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX2P48431 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX2P48431 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX2P48431 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms