Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 RN7SL81P-201ENST00000493781 261 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 FAM197Y6-201ENST00000420524 766 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 RPL3P5-201ENST00000441645 1232 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 FTH1P22-201ENST00000456305 520 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 AC026470.1-201ENST00000478038 846 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 PHF23-213ENST00000613632 850 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 Z98259.2-201ENST00000641583 609 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 CLUHP2-201ENST00000426660 1303 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 NCR3-202ENST00000376071 541 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 MESTP3-201ENST00000503460 968 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 AC113347.2-201ENST00000512350 279 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 NEU3-207ENST00000534628 746 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 CYP4F36P-201ENST00000589193 186 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 AL603764.1-201ENST00000636452 321 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 WASH7P-201ENST00000488147 1351 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 AC144522.1-201ENST00000625111 1658 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 AL137077.2-201ENST00000635124 1608 ntBASIC11.75□□□□□ -0.53
COL6A5A8TX70 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
COL6A5A8TX70 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
COL6A5A8TX70 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
COL6A5A8TX70 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
COL6A5A8TX70 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms