Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDH9Q9HC56 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
PCDH9Q9HC56 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 AC139795.1-202ENST00000500444 432 ntBASIC23.97■■□□□ 1.43
PCDH9Q9HC56 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDH9Q9HC56 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
PCDH9Q9HC56 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
PCDH9Q9HC56 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
PCDH9Q9HC56 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
PCDH9Q9HC56 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDH9Q9HC56 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
PCDH9Q9HC56 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDH9Q9HC56 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDH9Q9HC56 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 BHLHE23-202ENST00000612929 1109 ntBASIC23.94■■□□□ 1.42
PCDH9Q9HC56 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDH9Q9HC56 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 ABCB10P4-201ENST00000566803 2184 ntBASIC23.93■■□□□ 1.42
PCDH9Q9HC56 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDH9Q9HC56 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDH9Q9HC56 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDH9Q9HC56 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 LONRF2P2-201ENST00000439212 571 ntBASIC23.9■■□□□ 1.42
PCDH9Q9HC56 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
PCDH9Q9HC56 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDH9Q9HC56 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDH9Q9HC56 AC074183.2-201ENST00000623112 922 ntBASIC23.89■■□□□ 1.41
PCDH9Q9HC56 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.89■■□□□ 1.41
PCDH9Q9HC56 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.89■■□□□ 1.41
PCDH9Q9HC56 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.89■■□□□ 1.41
PCDH9Q9HC56 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDH9Q9HC56 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms