Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHFQ7M4L6 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SHFQ7M4L6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHFQ7M4L6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHFQ7M4L6 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHFQ7M4L6 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.89■□□□□ 0.93
SHFQ7M4L6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHFQ7M4L6 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.89■□□□□ 0.93
SHFQ7M4L6 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHFQ7M4L6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHFQ7M4L6 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHFQ7M4L6 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHFQ7M4L6 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SHFQ7M4L6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHFQ7M4L6 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHFQ7M4L6 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SHFQ7M4L6 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.87■□□□□ 0.93
SHFQ7M4L6 AC007029.1-201ENST00000604183 313 ntBASIC20.87■□□□□ 0.93
SHFQ7M4L6 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHFQ7M4L6 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.86■□□□□ 0.93
SHFQ7M4L6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.86■□□□□ 0.93
SHFQ7M4L6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 KRT18P10-201ENST00000388836 1287 ntBASIC20.86■□□□□ 0.93
SHFQ7M4L6 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.86■□□□□ 0.93
SHFQ7M4L6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SHFQ7M4L6 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.86■□□□□ 0.93
SHFQ7M4L6 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHFQ7M4L6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SHFQ7M4L6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SHFQ7M4L6 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.85■□□□□ 0.93
SHFQ7M4L6 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SHFQ7M4L6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SHFQ7M4L6 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHFQ7M4L6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHFQ7M4L6 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHFQ7M4L6 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.84■□□□□ 0.93
SHFQ7M4L6 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHFQ7M4L6 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHFQ7M4L6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
SHFQ7M4L6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHFQ7M4L6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.83■□□□□ 0.93
SHFQ7M4L6 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHFQ7M4L6 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHFQ7M4L6 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHFQ7M4L6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SHFQ7M4L6 AC079834.2-201ENST00000609776 1949 ntBASIC20.82■□□□□ 0.92
SHFQ7M4L6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHFQ7M4L6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHFQ7M4L6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHFQ7M4L6 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.8■□□□□ 0.92
SHFQ7M4L6 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHFQ7M4L6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHFQ7M4L6 MIR4449-201ENST00000578365 66 ntBASIC20.8■□□□□ 0.92
SHFQ7M4L6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms