Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
SOX9P48436 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.86■■□□□ 1.41
SOX9P48436 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SOX9P48436 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SOX9P48436 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SOX9P48436 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.86■■□□□ 1.41
SOX9P48436 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SOX9P48436 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SOX9P48436 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SOX9P48436 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SOX9P48436 SRD5A1P1-201ENST00000442297 786 ntBASIC23.85■■□□□ 1.41
SOX9P48436 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.85■■□□□ 1.41
SOX9P48436 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.85■■□□□ 1.41
SOX9P48436 RARRES2P6-201ENST00000567333 442 ntBASIC23.85■■□□□ 1.41
SOX9P48436 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.85■■□□□ 1.41
SOX9P48436 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SOX9P48436 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
SOX9P48436 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
SOX9P48436 AC135279.3-201ENST00000610945 1311 ntBASIC23.84■■□□□ 1.41
SOX9P48436 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
SOX9P48436 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.84■■□□□ 1.41
SOX9P48436 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SOX9P48436 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SOX9P48436 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SOX9P48436 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.84■■□□□ 1.41
SOX9P48436 SUDS3P1-201ENST00000505831 966 ntBASIC23.84■■□□□ 1.41
SOX9P48436 AC024257.2-201ENST00000549699 147 ntBASIC23.84■■□□□ 1.41
SOX9P48436 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SOX9P48436 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.84■■□□□ 1.41
SOX9P48436 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.84■■□□□ 1.41
SOX9P48436 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SOX9P48436 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SOX9P48436 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.83■■□□□ 1.41
SOX9P48436 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SOX9P48436 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
SOX9P48436 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
SOX9P48436 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.82■■□□□ 1.4
SOX9P48436 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SOX9P48436 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SOX9P48436 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.81■■□□□ 1.4
SOX9P48436 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SOX9P48436 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.81■■□□□ 1.4
SOX9P48436 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.81■■□□□ 1.4
SOX9P48436 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SOX9P48436 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SOX9P48436 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
SOX9P48436 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SOX9P48436 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SOX9P48436 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SOX9P48436 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SOX9P48436 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.8■■□□□ 1.4
SOX9P48436 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.8■■□□□ 1.4
SOX9P48436 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.8■■□□□ 1.4
SOX9P48436 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.8■■□□□ 1.4
SOX9P48436 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SOX9P48436 AC010501.1-201ENST00000606270 1962 ntBASIC23.8■■□□□ 1.4
SOX9P48436 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.79■■□□□ 1.4
SOX9P48436 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 AC004448.1-201ENST00000458332 883 ntBASIC23.79■■□□□ 1.4
SOX9P48436 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SOX9P48436 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX9P48436 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SOX9P48436 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SOX9P48436 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.78■■□□□ 1.4
SOX9P48436 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.78■■□□□ 1.4
SOX9P48436 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SOX9P48436 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.78■■□□□ 1.4
SOX9P48436 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.77■■□□□ 1.4
SOX9P48436 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.77■■□□□ 1.4
SOX9P48436 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SOX9P48436 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
SOX9P48436 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SOX9P48436 AC026271.2-201ENST00000428091 497 ntBASIC23.76■■□□□ 1.39
SOX9P48436 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.76■■□□□ 1.39
SOX9P48436 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
SOX9P48436 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
SOX9P48436 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SOX9P48436 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
SOX9P48436 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX9P48436 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SOX9P48436 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.75■■□□□ 1.39
SOX9P48436 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SOX9P48436 EDA-201ENST00000338901 1233 ntBASIC23.75■■□□□ 1.39
SOX9P48436 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.75■■□□□ 1.39
SOX9P48436 AC092666.2-201ENST00000613287 246 ntBASIC23.75■■□□□ 1.39
SOX9P48436 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.75■■□□□ 1.39
SOX9P48436 AL355001.2-201ENST00000620617 1191 ntBASIC23.75■■□□□ 1.39
SOX9P48436 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.75■■□□□ 1.39
SOX9P48436 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
SOX9P48436 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms