Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
LDB3O75112 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
LDB3O75112 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LDB3O75112 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LDB3O75112 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.87■■□□□ 1.09
LDB3O75112 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LDB3O75112 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LDB3O75112 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.86■■□□□ 1.09
LDB3O75112 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
LDB3O75112 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
LDB3O75112 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.86■■□□□ 1.09
LDB3O75112 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDB3O75112 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDB3O75112 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDB3O75112 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDB3O75112 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LDB3O75112 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.85■■□□□ 1.09
LDB3O75112 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LDB3O75112 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.85■■□□□ 1.09
LDB3O75112 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.85■■□□□ 1.09
LDB3O75112 AL139125.2-201ENST00000623134 1869 ntBASIC21.85■■□□□ 1.09
LDB3O75112 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.85■■□□□ 1.09
LDB3O75112 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
LDB3O75112 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.84■■□□□ 1.09
LDB3O75112 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LDB3O75112 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.84■■□□□ 1.09
LDB3O75112 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
LDB3O75112 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
LDB3O75112 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LDB3O75112 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.83■■□□□ 1.09
LDB3O75112 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LDB3O75112 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
LDB3O75112 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LDB3O75112 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LDB3O75112 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LDB3O75112 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
LDB3O75112 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LDB3O75112 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB3O75112 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.82■■□□□ 1.08
LDB3O75112 AC009299.2-201ENST00000482477 511 ntBASIC21.82■■□□□ 1.08
LDB3O75112 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
LDB3O75112 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.82■■□□□ 1.08
LDB3O75112 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.82■■□□□ 1.08
LDB3O75112 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
LDB3O75112 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LDB3O75112 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.81■■□□□ 1.08
LDB3O75112 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LDB3O75112 LINC01124-201ENST00000409786 2117 ntBASIC21.81■■□□□ 1.08
LDB3O75112 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.81■■□□□ 1.08
LDB3O75112 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
LDB3O75112 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LDB3O75112 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
LDB3O75112 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.81■■□□□ 1.08
LDB3O75112 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.81■■□□□ 1.08
LDB3O75112 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.81■■□□□ 1.08
LDB3O75112 AF131216.4-201ENST00000638924 1588 ntBASIC21.81■■□□□ 1.08
LDB3O75112 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LDB3O75112 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LDB3O75112 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB3O75112 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB3O75112 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB3O75112 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.8■■□□□ 1.08
LDB3O75112 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
LDB3O75112 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB3O75112 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LDB3O75112 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDB3O75112 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.79■■□□□ 1.08
LDB3O75112 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.79■■□□□ 1.08
LDB3O75112 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.79■■□□□ 1.08
LDB3O75112 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDB3O75112 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDB3O75112 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB3O75112 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LDB3O75112 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB3O75112 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
LDB3O75112 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
LDB3O75112 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.78■■□□□ 1.08
LDB3O75112 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB3O75112 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LDB3O75112 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDB3O75112 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.77■■□□□ 1.08
LDB3O75112 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LDB3O75112 AC137630.3-201ENST00000607245 391 ntBASIC21.77■■□□□ 1.08
LDB3O75112 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDB3O75112 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.76■■□□□ 1.07
LDB3O75112 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LDB3O75112 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
LDB3O75112 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDB3O75112 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.76■■□□□ 1.07
LDB3O75112 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LDB3O75112 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDB3O75112 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB3O75112 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LDB3O75112 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
LDB3O75112 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LDB3O75112 BX664725.1-201ENST00000438252 379 ntBASIC21.75■■□□□ 1.07
LDB3O75112 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.75■■□□□ 1.07
LDB3O75112 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.75■■□□□ 1.07
LDB3O75112 AL035685.1-201ENST00000636663 812 ntBASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 292.7 ms