Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 RPS2P7-201ENST00000447334 885 ntBASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CPSF4LA6NMK7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CPSF4LA6NMK7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.33■■□□□ 1.01
CPSF4LA6NMK7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CPSF4LA6NMK7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.33■■□□□ 1
CPSF4LA6NMK7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CPSF4LA6NMK7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.32■■□□□ 1
CPSF4LA6NMK7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.32■■□□□ 1
CPSF4LA6NMK7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.32■■□□□ 1
CPSF4LA6NMK7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CPSF4LA6NMK7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.32■■□□□ 1
CPSF4LA6NMK7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
CPSF4LA6NMK7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 RARRES2P2-201ENST00000394842 485 ntBASIC21.31■■□□□ 1
CPSF4LA6NMK7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.31■■□□□ 1
CPSF4LA6NMK7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.31■■□□□ 1
CPSF4LA6NMK7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CPSF4LA6NMK7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4LA6NMK7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4LA6NMK7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CPSF4LA6NMK7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CPSF4LA6NMK7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CPSF4LA6NMK7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.3■■□□□ 1
CPSF4LA6NMK7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPSF4LA6NMK7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4LA6NMK7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4LA6NMK7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 DUX4L9-201ENST00000449051 1259 ntBASIC21.29■■□□□ 1
CPSF4LA6NMK7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CPSF4LA6NMK7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.29■■□□□ 1
CPSF4LA6NMK7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4LA6NMK7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CPSF4LA6NMK7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 MIR6765-201ENST00000614092 87 ntBASIC21.28■■□□□ 1
CPSF4LA6NMK7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPSF4LA6NMK7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CPSF4LA6NMK7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.27■■□□□ 1
CPSF4LA6NMK7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CPSF4LA6NMK7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4LA6NMK7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPSF4LA6NMK7 HSD17B1P1-201ENST00000590052 955 ntBASIC21.27■■□□□ 1
CPSF4LA6NMK7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.27■■□□□ 1
CPSF4LA6NMK7 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CPSF4LA6NMK7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.27■■□□□ 1
CPSF4LA6NMK7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CPSF4LA6NMK7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.27■□□□□ 0.99
CPSF4LA6NMK7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CPSF4LA6NMK7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 AC087393.1-201ENST00000582896 145 ntBASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 U85056.1-201ENST00000616429 682 ntBASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4LA6NMK7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.25■□□□□ 0.99
CPSF4LA6NMK7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.25■□□□□ 0.99
CPSF4LA6NMK7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms