Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC022087.1-201ENST00000558372 612 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC010336.2-201ENST00000564226 506 ntBASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AC015910.1-201ENST00000579400 975 ntBASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS9D1Q9Y2B5 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC148477.4-201ENST00000613430 1793 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 HYMAI-201ENST00000635591 3347 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC074338.1-201ENST00000416825 156 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 RPL13P2-201ENST00000440687 659 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AL049829.1-201ENST00000465411 156 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AL512361.1-201ENST00000554200 418 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC009118.3-201ENST00000622896 873 ntBASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VPS9D1Q9Y2B5 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms