Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 BANF1P3-201ENST00000412556 261 ntBASIC14.08□□□□□ -0.16
CHD8Q9HCK8 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 FAM197Y6-201ENST00000420524 766 ntBASIC14.08□□□□□ -0.16
CHD8Q9HCK8 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 AL590235.1-201ENST00000564650 861 ntBASIC14.08□□□□□ -0.16
CHD8Q9HCK8 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHD8Q9HCK8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 FRMPD2B-201ENST00000431305 1347 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 DUTP3-201ENST00000450025 415 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 CYP4F36P-201ENST00000589193 186 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC012441.2-201ENST00000444843 739 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC005962.1-201ENST00000584100 773 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 AC011840.2-201ENST00000563063 1520 ntBASIC14.07□□□□□ -0.16
CHD8Q9HCK8 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHD8Q9HCK8 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 PHF23-213ENST00000613632 850 ntTSL 5 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 MIR6746-201ENST00000620971 63 ntBASIC14.06□□□□□ -0.16
CHD8Q9HCK8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.06□□□□□ -0.16
CHD8Q9HCK8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms