Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
FOXA3P55318 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA3P55318 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA3P55318 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 AC006504.4-201ENST00000592118 1568 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC11.75□□□□□ -0.53
FOXA3P55318 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 AC012615.1-201ENST00000565797 1299 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC11.75□□□□□ -0.53
FOXA3P55318 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 AL031055.1-201ENST00000606362 631 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.75□□□□□ -0.53
FOXA3P55318 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 AL121956.5-201ENST00000625261 221 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 BX640514.1-201ENST00000583223 1918 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 COL6A4P2-202ENST00000504443 2753 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA3P55318 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 AC005562.1-201ENST00000583030 3219 ntBASIC11.75□□□□□ -0.53
FOXA3P55318 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
FOXA3P55318 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA3P55318 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.74□□□□□ -0.53
FOXA3P55318 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 TKT-201ENST00000296289 1931 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA3P55318 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.74□□□□□ -0.53
FOXA3P55318 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
FOXA3P55318 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
FOXA3P55318 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA3P55318 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms