Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 RNU1-114P-201ENST00000365297 166 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 AC092933.1-201ENST00000393644 945 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.71■□□□□ 0.43
SMARCA1P28370 TMEM14DP-201ENST00000422205 345 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 HLA-K-203ENST00000430151 1046 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.71■□□□□ 0.43
SMARCA1P28370 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 DUX4L47-201ENST00000566374 394 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 AC239800.4-201ENST00000603712 296 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 AL022328.1-201ENST00000610050 478 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 CICP6-201ENST00000457191 2729 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.71■□□□□ 0.43
SMARCA1P28370 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SMARCA1P28370 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.71■□□□□ 0.42
SMARCA1P28370 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 MSTO2P-201ENST00000314835 1709 ntBASIC17.7■□□□□ 0.42
SMARCA1P28370 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.7■□□□□ 0.42
SMARCA1P28370 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.7■□□□□ 0.42
SMARCA1P28370 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.7■□□□□ 0.42
SMARCA1P28370 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SMARCA1P28370 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 MST1L-201ENST00000442552 2185 ntBASIC17.7■□□□□ 0.42
SMARCA1P28370 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 KRT8P35-201ENST00000483942 1338 ntBASIC17.7■□□□□ 0.42
SMARCA1P28370 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMARCA1P28370 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.7■□□□□ 0.42
SMARCA1P28370 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 AC008741.2-201ENST00000612792 3115 ntBASIC17.69■□□□□ 0.42
SMARCA1P28370 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.69■□□□□ 0.42
SMARCA1P28370 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.69■□□□□ 0.42
SMARCA1P28370 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.69■□□□□ 0.42
SMARCA1P28370 AL355864.2-201ENST00000447420 863 ntBASIC17.69■□□□□ 0.42
SMARCA1P28370 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.69■□□□□ 0.42
SMARCA1P28370 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.69■□□□□ 0.42
SMARCA1P28370 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms