Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
FOXN3O00409 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
FOXN3O00409 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
FOXN3O00409 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXN3O00409 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXN3O00409 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC004890.2-204ENST00000481968 304 ntBASIC16.64■□□□□ 0.25
FOXN3O00409 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
FOXN3O00409 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC008738.7-201ENST00000609744 511 ntBASIC16.64■□□□□ 0.25
FOXN3O00409 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.64■□□□□ 0.25
FOXN3O00409 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.64■□□□□ 0.25
FOXN3O00409 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
FOXN3O00409 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXN3O00409 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
FOXN3O00409 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
FOXN3O00409 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
FOXN3O00409 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
FOXN3O00409 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
FOXN3O00409 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
FOXN3O00409 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXN3O00409 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXN3O00409 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
FOXN3O00409 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 AL589987.1-201ENST00000453380 819 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXN3O00409 SPDYE18-201ENST00000510091 1050 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 TIMM17BP1-201ENST00000545713 516 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.63■□□□□ 0.25
FOXN3O00409 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXN3O00409 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.63■□□□□ 0.25
FOXN3O00409 GPALPP1-207ENST00000611650 899 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 AC106028.4-201ENST00000614509 607 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXN3O00409 AC004840.1-201ENST00000636359 365 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXN3O00409 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
FOXN3O00409 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.63■□□□□ 0.25
FOXN3O00409 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
FOXN3O00409 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXN3O00409 AP000845.1-201ENST00000581677 2131 ntBASIC16.63■□□□□ 0.25
FOXN3O00409 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXN3O00409 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXN3O00409 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
FOXN3O00409 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
FOXN3O00409 AC106881.1-201ENST00000605849 3329 ntBASIC16.62■□□□□ 0.25
FOXN3O00409 BTBD7P1-201ENST00000447253 1453 ntBASIC16.62■□□□□ 0.25
FOXN3O00409 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
FOXN3O00409 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXN3O00409 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXN3O00409 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXN3O00409 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms