Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SMC4Q9NTJ3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 RARRES2P5-201ENST00000564013 466 ntBASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMC4Q9NTJ3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 NORAD-201ENST00000565493 5339 ntBASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 OSM-203ENST00000403463 464 ntTSL 3 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 RHOA-206ENST00000454011 889 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 CD81-207ENST00000481687 890 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 AC036164.1-201ENST00000570544 333 ntBASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 RN7SL204P-201ENST00000582831 262 ntBASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC4Q9NTJ3 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms