Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.57□□□□□ -0.08
RFX4Q33E94 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.57□□□□□ -0.08
RFX4Q33E94 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
RFX4Q33E94 REXO1L1P-202ENST00000608646 1974 ntBASIC14.57□□□□□ -0.08
RFX4Q33E94 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RFX4Q33E94 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.57□□□□□ -0.08
RFX4Q33E94 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.57□□□□□ -0.08
RFX4Q33E94 AL662844.1-201ENST00000546340 181 ntBASIC14.57□□□□□ -0.08
RFX4Q33E94 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.57□□□□□ -0.08
RFX4Q33E94 AL161645.1-201ENST00000622716 1255 ntBASIC14.57□□□□□ -0.08
RFX4Q33E94 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
RFX4Q33E94 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFX4Q33E94 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.57□□□□□ -0.08
RFX4Q33E94 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.56□□□□□ -0.08
RFX4Q33E94 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.56□□□□□ -0.08
RFX4Q33E94 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
RFX4Q33E94 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
RFX4Q33E94 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX4Q33E94 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 AC018892.3-201ENST00000623986 2499 ntBASIC14.56□□□□□ -0.08
RFX4Q33E94 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
RFX4Q33E94 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX4Q33E94 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
RFX4Q33E94 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
RFX4Q33E94 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.55□□□□□ -0.08
RFX4Q33E94 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX4Q33E94 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.55□□□□□ -0.08
RFX4Q33E94 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms