Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
CDX1P47902 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CDX1P47902 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.85□□□□□ -0.35
CDX1P47902 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CDX1P47902 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 AC087386.2-201ENST00000623212 4637 ntBASIC12.84□□□□□ -0.35
CDX1P47902 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
CDX1P47902 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 MIR346-201ENST00000362234 95 ntBASIC12.84□□□□□ -0.35
CDX1P47902 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.84□□□□□ -0.35
CDX1P47902 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
CDX1P47902 AC105233.2-201ENST00000523697 349 ntBASIC12.84□□□□□ -0.35
CDX1P47902 AF228730.5-201ENST00000530288 346 ntBASIC12.84□□□□□ -0.35
CDX1P47902 RFPL4AP1-201ENST00000530883 850 ntBASIC12.84□□□□□ -0.35
CDX1P47902 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.84□□□□□ -0.35
CDX1P47902 AC015911.4-201ENST00000588022 1070 ntBASIC12.84□□□□□ -0.35
CDX1P47902 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.84□□□□□ -0.35
CDX1P47902 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 AP001059.3-201ENST00000619053 235 ntBASIC12.84□□□□□ -0.35
CDX1P47902 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 AL671710.1-201ENST00000610245 2349 ntBASIC12.84□□□□□ -0.35
CDX1P47902 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CDX1P47902 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CDX1P47902 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.84□□□□□ -0.35
CDX1P47902 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.84□□□□□ -0.35
CDX1P47902 CICP8-201ENST00000455800 2813 ntBASIC12.84□□□□□ -0.35
CDX1P47902 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CDX1P47902 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CDX1P47902 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.35
CDX1P47902 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CDX1P47902 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.83□□□□□ -0.35
CDX1P47902 AC006504.5-208ENST00000588784 2401 ntBASIC12.83□□□□□ -0.35
CDX1P47902 AL645728.1-201ENST00000366221 2101 ntBASIC12.83□□□□□ -0.35
CDX1P47902 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.83□□□□□ -0.35
CDX1P47902 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CDX1P47902 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
CDX1P47902 COL6A4P2-202ENST00000504443 2753 ntBASIC12.83□□□□□ -0.36
CDX1P47902 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CDX1P47902 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms