Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SRRM4A7MD48 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.59□□□□□ -0.39
SRRM4A7MD48 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SRRM4A7MD48 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
SRRM4A7MD48 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.58□□□□□ -0.39
SRRM4A7MD48 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 KRT18P64-201ENST00000434946 1219 ntBASIC12.58□□□□□ -0.4
SRRM4A7MD48 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 AC025048.3-201ENST00000590609 569 ntBASIC12.58□□□□□ -0.4
SRRM4A7MD48 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 AC005702.4-201ENST00000618393 416 ntBASIC12.58□□□□□ -0.4
SRRM4A7MD48 Z92544.3-201ENST00000624747 417 ntBASIC12.58□□□□□ -0.4
SRRM4A7MD48 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.58□□□□□ -0.4
SRRM4A7MD48 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SRRM4A7MD48 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 TSEN15P1-201ENST00000423257 515 ntBASIC12.57□□□□□ -0.4
SRRM4A7MD48 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.57□□□□□ -0.4
SRRM4A7MD48 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SRRM4A7MD48 HLA-V-204ENST00000476601 1289 ntBASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms