Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 MIR8072-201ENST00000614241 80 ntBASIC16.61■□□□□ 0.25
CISHQ9NSE2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.61■□□□□ 0.25
CISHQ9NSE2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CISHQ9NSE2 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 PIN1P1-201ENST00000412108 996 ntBASIC16.6■□□□□ 0.25
CISHQ9NSE2 AL353779.1-201ENST00000434793 351 ntBASIC16.6■□□□□ 0.25
CISHQ9NSE2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 API5-211ENST00000534695 560 ntTSL 5 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 CHCHD2P3-201ENST00000603038 451 ntBASIC16.6■□□□□ 0.25
CISHQ9NSE2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 CICP11-201ENST00000434745 2827 ntBASIC16.6■□□□□ 0.25
CISHQ9NSE2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 AL391825.1-201ENST00000457671 1364 ntBASIC16.6■□□□□ 0.25
CISHQ9NSE2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CISHQ9NSE2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CISHQ9NSE2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms