Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AC131009.4-201ENST00000624048 1740 ntBASIC11.06□□□□□ -0.64
CKS1BP61024 AL512652.2-201ENST00000625156 1716 ntBASIC11.06□□□□□ -0.64
CKS1BP61024 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 PC-214ENST00000628663 1470 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC11.06□□□□□ -0.64
CKS1BP61024 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 CDK2AP2P3-201ENST00000422476 372 ntBASIC11.06□□□□□ -0.64
CKS1BP61024 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC11.06□□□□□ -0.64
CKS1BP61024 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
CKS1BP61024 MSRA-206ENST00000521209 814 ntTSL 3 BASIC11.06□□□□□ -0.64
CKS1BP61024 AL049597.2-201ENST00000565575 961 ntBASIC11.06□□□□□ -0.64
CKS1BP61024 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 AL589182.2-201ENST00000619332 1049 ntBASIC11.06□□□□□ -0.64
CKS1BP61024 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC11.06□□□□□ -0.64
CKS1BP61024 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
CKS1BP61024 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CKS1BP61024 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CKS1BP61024 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 GPAA1P2-202ENST00000606848 1787 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 AC232323.1-201ENST00000540724 2099 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 REXO1L5P-201ENST00000622260 2098 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms