Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.481e-8■□□□□ 10.3
YBX3P16989 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.57□□□□□ -1.841e-7■□□□□ 10.3
YBX3P16989 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.881e-7■□□□□ 10.3
YBX3P16989 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.91□□□□□ -1.941e-7■□□□□ 10.3
YBX3P16989 TNIP1-207ENST00000520695 658 ntTSL 425.97■■□□□ 1.752e-9■□□□□ 10.3
YBX3P16989 RPS5-208ENST00000599909 523 ntTSL 215.6■□□□□ 0.093e-41■□□□□ 10.3
YBX3P16989 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.224e-18■□□□□ 10.3
YBX3P16989 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.774e-18■□□□□ 10.3
YBX3P16989 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.054e-18■□□□□ 10.3
YBX3P16989 CLIC1-207ENST00000375780 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.044e-18■□□□□ 10.3
YBX3P16989 CLIC1-210ENST00000616760 1098 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.34e-18■□□□□ 10.3
YBX3P16989 STAT5B-204ENST00000468496 897 ntTSL 58.85□□□□□ -0.999e-10■□□□□ 10.3
YBX3P16989 STAT5B-205ENST00000481253 491 ntTSL 28.37□□□□□ -1.079e-10■□□□□ 10.3
YBX3P16989 MARCH7-205ENST00000421037 559 ntTSL 418.24■□□□□ 0.516e-8■□□□□ 10.3
YBX3P16989 PIGT-233ENST00000638953 952 ntTSL 518.02■□□□□ 0.481e-10■□□□□ 10.3
YBX3P16989 MARCH7-207ENST00000473749 821 ntTSL 317.14■□□□□ 0.336e-8■□□□□ 10.3
YBX3P16989 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.12■□□□□ 0.816e-10■□□□□ 10.3
YBX3P16989 DEK-204ENST00000505224 1372 ntTSL 216.64■□□□□ 0.256e-10■□□□□ 10.3
YBX3P16989 TLN1-205ENST00000466916 446 ntTSL 213.35□□□□□ -0.271e-7■□□□□ 10.3
YBX3P16989 CLPTM1-208ENST00000588274 805 ntTSL 219.44■□□□□ 0.72e-13■□□□□ 10.2
YBX3P16989 CEP57-211ENST00000539855 1739 ntTSL 517.79■□□□□ 0.446e-7■□□□□ 10.2
YBX3P16989 CEP57-212ENST00000540830 1936 ntTSL 1 (best)15.48■□□□□ 0.076e-7■□□□□ 10.2
YBX3P16989 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -16e-7■□□□□ 10.2
YBX3P16989 EXOC4-211ENST00000478265 595 ntTSL 46.8□□□□□ -1.322e-6■□□□□ 10.2
YBX3P16989 GFM2-210ENST00000515125 1125 ntTSL 36.31□□□□□ -1.45e-8■□□□□ 10.2
YBX3P16989 OAT-202ENST00000467675 810 ntTSL 513.08□□□□□ -0.327e-14■□□□□ 10.2
YBX3P16989 OAT-205ENST00000483711 570 ntTSL 55.91□□□□□ -1.467e-14■□□□□ 10.2
YBX3P16989 EXOSC1-206ENST00000472345 451 ntTSL 315.54■□□□□ 0.087e-8■□□□□ 10.2
YBX3P16989 CERS2-204ENST00000368949 1002 ntTSL 517.44■□□□□ 0.386e-10■□□□□ 10.2
YBX3P16989 KMT2A-205ENST00000527839 2096 ntTSL 311.22□□□□□ -0.619e-9■□□□□ 10.2
YBX3P16989 KMT2A-204ENST00000525408 853 ntTSL 210.08□□□□□ -0.89e-9■□□□□ 10.2
YBX3P16989 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.268e-7■□□□□ 10.2
YBX3P16989 SRP68-211ENST00000592704 1941 ntTSL 231.5■■■□□ 2.632e-6■□□□□ 10.2
YBX3P16989 SLC50A1-211ENST00000490276 778 ntTSL 326.24■■□□□ 1.791e-6■□□□□ 10.2
YBX3P16989 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.61■■□□□ 1.531e-6■□□□□ 10.2
YBX3P16989 SLC50A1-210ENST00000488609 890 ntTSL 322.22■■□□□ 1.151e-6■□□□□ 10.2
YBX3P16989 SLC50A1-213ENST00000506037 928 ntTSL 222.06■■□□□ 1.121e-6■□□□□ 10.2
YBX3P16989 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.95■□□□□ 0.941e-6■□□□□ 10.2
YBX3P16989 SLC50A1-205ENST00000465546 538 ntTSL 318.79■□□□□ 0.61e-6■□□□□ 10.2
YBX3P16989 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.38■□□□□ 0.531e-6■□□□□ 10.2
YBX3P16989 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.521e-6■□□□□ 10.2
YBX3P16989 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC16.75■□□□□ 0.271e-6■□□□□ 10.2
YBX3P16989 SLC50A1-204ENST00000368405 1003 ntTSL 215.86■□□□□ 0.131e-6■□□□□ 10.2
YBX3P16989 SLC50A1-208ENST00000484027 596 ntTSL 315.86■□□□□ 0.131e-6■□□□□ 10.2
YBX3P16989 SLC50A1-206ENST00000475824 770 ntTSL 515.6■□□□□ 0.091e-6■□□□□ 10.2
YBX3P16989 SLC50A1-212ENST00000490770 991 ntTSL 313.26□□□□□ -0.291e-6■□□□□ 10.2
YBX3P16989 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.8□□□□□ -0.044e-8■□□□□ 10.2
YBX3P16989 ABCC6-202ENST00000456970 4137 ntTSL 214.32□□□□□ -0.124e-8■□□□□ 10.2
YBX3P16989 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.174e-8■□□□□ 10.2
YBX3P16989 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.097e-7■□□□□ 10.2
YBX3P16989 AF241726.2-201ENST00000465127 954 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.077e-7■□□□□ 10.2
YBX3P16989 CYFIP1-205ENST00000612288 553 ntTSL 314.49□□□□□ -0.092e-10■□□□□ 10.2
YBX3P16989 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.182e-10■□□□□ 10.2
YBX3P16989 NRDC-203ENST00000440943 1660 ntTSL 510.79□□□□□ -0.688e-9■□□□□ 10.2
YBX3P16989 RNF10-225ENST00000551139 583 ntTSL 313.88□□□□□ -0.191e-6■□□□□ 10.2
YBX3P16989 RNF10-210ENST00000537997 583 ntTSL 48.22□□□□□ -1.091e-6■□□□□ 10.2
YBX3P16989 RNF10-218ENST00000543578 548 ntTSL 48.1□□□□□ -1.111e-6■□□□□ 10.2
YBX3P16989 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.11■■■□□ 2.419e-7■□□□□ 10.2
YBX3P16989 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.55■■■□□ 29e-7■□□□□ 10.2
YBX3P16989 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.819e-7■□□□□ 10.2
YBX3P16989 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.38■■□□□ 1.335e-10■□□□□ 10.2
YBX3P16989 MRPL49-204ENST00000526319 1906 ntTSL 220.1■□□□□ 0.815e-10■□□□□ 10.2
YBX3P16989 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.175e-10■□□□□ 10.2
YBX3P16989 MRPL49-202ENST00000524482 2065 ntTSL 214□□□□□ -0.175e-10■□□□□ 10.2
YBX3P16989 MRPL49-207ENST00000532671 2526 ntTSL 212.42□□□□□ -0.425e-10■□□□□ 10.2
YBX3P16989 EFTUD2-217ENST00000590124 899 ntTSL 326.08■■□□□ 1.772e-7■□□□□ 10.2
YBX3P16989 EFTUD2-214ENST00000589769 689 ntTSL 317.6■□□□□ 0.412e-7■□□□□ 10.2
YBX3P16989 EFTUD2-219ENST00000590977 2422 ntTSL 210.13□□□□□ -0.792e-7■□□□□ 10.2
YBX3P16989 AP2A1-205ENST00000597774 2196 ntTSL 518.59■□□□□ 0.571e-8■□□□□ 10.2
YBX3P16989 AP2A1-202ENST00000359032 3286 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.421e-8■□□□□ 10.2
YBX3P16989 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.675e-9■□□□□ 10.2
YBX3P16989 NPM3-204ENST00000474993 755 ntTSL 225.03■■□□□ 1.65e-9■□□□□ 10.2
YBX3P16989 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.099e-9■□□□□ 10.2
YBX3P16989 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.769e-9■□□□□ 10.2
YBX3P16989 PLPPR3-202ENST00000517665 362 ntTSL 318.12■□□□□ 0.499e-9■□□□□ 10.2
YBX3P16989 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.162e-9■□□□□ 10.2
YBX3P16989 HK1-202ENST00000359426 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.524e-10■□□□□ 10.2
YBX3P16989 HK1-201ENST00000298649 3596 ntTSL 5 BASIC11.29□□□□□ -0.64e-10■□□□□ 10.2
YBX3P16989 HK1-206ENST00000448642 3868 ntTSL 5 BASIC10.34□□□□□ -0.754e-10■□□□□ 10.2
YBX3P16989 HK1-203ENST00000360289 3961 ntTSL 5 BASIC9.74□□□□□ -0.854e-10■□□□□ 10.2
YBX3P16989 FAXDC2-202ENST00000423554 3817 ntTSL 210.33□□□□□ -0.762e-6■□□□□ 10.2
YBX3P16989 FAXDC2-201ENST00000326080 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.932e-6■□□□□ 10.2
YBX3P16989 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.942e-10■□□□□ 10.2
YBX3P16989 UBAC2-201ENST00000355700 748 ntTSL 322.19■■□□□ 1.142e-10■□□□□ 10.2
YBX3P16989 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.952e-10■□□□□ 10.2
YBX3P16989 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.822e-10■□□□□ 10.2
YBX3P16989 GTF2A2-201ENST00000267869 518 ntTSL 318.81■□□□□ 0.62e-10■□□□□ 10.2
YBX3P16989 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.81■□□□□ 0.62e-10■□□□□ 10.2
YBX3P16989 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.81■□□□□ 0.62e-10■□□□□ 10.2
YBX3P16989 UBAC2-206ENST00000468067 968 ntTSL 216.92■□□□□ 0.32e-10■□□□□ 10.2
YBX3P16989 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.74■□□□□ 0.112e-10■□□□□ 10.2
YBX3P16989 UBAC2-211ENST00000494576 1855 ntTSL 215.18■□□□□ 0.022e-10■□□□□ 10.2
YBX3P16989 UBAC2-205ENST00000460562 2350 ntTSL 214.23□□□□□ -0.132e-10■□□□□ 10.2
YBX3P16989 GTF2A2-202ENST00000396060 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.232e-10■□□□□ 10.2
YBX3P16989 UBAC2-208ENST00000473194 861 ntTSL 1 (best)11.7□□□□□ -0.542e-10■□□□□ 10.2
YBX3P16989 UBAC2-210ENST00000480738 1017 ntTSL 1 (best)11.65□□□□□ -0.542e-10■□□□□ 10.2
YBX3P16989 LSM14A-206ENST00000588582 3601 ntTSL 210.3□□□□□ -0.762e-10■□□□□ 10.2
YBX3P16989 EIF3D-203ENST00000405442 1851 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.376e-10■□□□□ 10.2
YBX3P16989 TPX2-201ENST00000300403 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.415e-8■□□□□ 10.2
YBX3P16989 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC11.55□□□□□ -0.565e-8■□□□□ 10.2
Retrieved 100 of 29,075 protein–RNA pairs in 198.7 ms