Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC020916.1-201ENST00000587762 1774 ntBASIC9.44□□□□□ -0.9
APOBP04114 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 AP000593.2-201ENST00000542775 1433 ntBASIC9.44□□□□□ -0.9
APOBP04114 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
APOBP04114 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC9.44□□□□□ -0.9
APOBP04114 ALG1L6P-201ENST00000515248 758 ntBASIC9.44□□□□□ -0.9
APOBP04114 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 DDX5-235ENST00000630471 473 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC9.44□□□□□ -0.9
APOBP04114 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC9.44□□□□□ -0.9
APOBP04114 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC9.44□□□□□ -0.9
APOBP04114 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC9.44□□□□□ -0.9
APOBP04114 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC9.44□□□□□ -0.9
APOBP04114 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC9.44□□□□□ -0.9
APOBP04114 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC9.44□□□□□ -0.9
APOBP04114 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
APOBP04114 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
APOBP04114 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 AC018463.1-201ENST00000456674 917 ntBASIC9.43□□□□□ -0.9
APOBP04114 HNRNPA1P36-201ENST00000521313 955 ntBASIC9.43□□□□□ -0.9
APOBP04114 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC9.43□□□□□ -0.9
APOBP04114 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 AC103810.10-201ENST00000606504 343 ntBASIC9.43□□□□□ -0.9
APOBP04114 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 KRT8P31-201ENST00000504812 1408 ntBASIC9.43□□□□□ -0.9
APOBP04114 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
APOBP04114 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 AC004522.1-201ENST00000419978 654 ntBASIC9.43□□□□□ -0.9
APOBP04114 PUDPP3-201ENST00000445368 636 ntBASIC9.43□□□□□ -0.9
APOBP04114 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC9.43□□□□□ -0.9
APOBP04114 AL109837.1-201ENST00000603272 613 ntBASIC9.43□□□□□ -0.9
APOBP04114 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 FAM58BP-201ENST00000439056 645 ntBASIC9.43□□□□□ -0.9
APOBP04114 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC9.43□□□□□ -0.9
APOBP04114 AC130709.1-201ENST00000484779 1212 ntBASIC9.43□□□□□ -0.9
APOBP04114 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 POLD4-208ENST00000532830 904 ntTSL 3 BASIC9.43□□□□□ -0.9
APOBP04114 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC9.43□□□□□ -0.9
APOBP04114 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 SP100-205ENST00000409824 1802 ntTSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
APOBP04114 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 PFN2-206ENST00000461930 606 ntTSL 4 BASIC9.43□□□□□ -0.9
APOBP04114 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC9.43□□□□□ -0.9
APOBP04114 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
APOBP04114 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms