Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.81□□□□□ -0.36
SSSCA1O60232 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC12.81□□□□□ -0.36
SSSCA1O60232 AL356488.2-201ENST00000602755 427 ntBASIC12.81□□□□□ -0.36
SSSCA1O60232 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 AC005593.1-201ENST00000624894 515 ntBASIC12.81□□□□□ -0.36
SSSCA1O60232 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SSSCA1O60232 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SSSCA1O60232 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
SSSCA1O60232 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC12.8□□□□□ -0.36
SSSCA1O60232 AL121772.3-201ENST00000610840 674 ntBASIC12.8□□□□□ -0.36
SSSCA1O60232 REXO1L6P-202ENST00000619970 1078 ntBASIC12.8□□□□□ -0.36
SSSCA1O60232 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC12.8□□□□□ -0.36
SSSCA1O60232 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SSSCA1O60232 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.8□□□□□ -0.36
SSSCA1O60232 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
SSSCA1O60232 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.79□□□□□ -0.36
SSSCA1O60232 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SSSCA1O60232 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms