Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RARRES2P9-201ENST00000565168 469 ntBASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CICP14-201ENST00000629111 2732 ntBASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AC138035.3-201ENST00000622706 2791 ntBASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 TIMM8BP1-201ENST00000452384 211 ntBASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 KRT18P58-201ENST00000527480 1120 ntBASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AC097359.3-201ENST00000603982 1210 ntBASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 AC092127.1-201ENST00000567093 3455 ntBASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC54Q8NEL0 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 AC023274.1-201ENST00000418278 595 ntBASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms