Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 DBET-201ENST00000630918 3363 ntBASIC18.7■□□□□ 0.58
RNF20Q5VTR2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 AC023824.1-201ENST00000562945 2975 ntBASIC18.7■□□□□ 0.58
RNF20Q5VTR2 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RNF20Q5VTR2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 AC015922.1-201ENST00000421102 1152 ntBASIC18.69■□□□□ 0.58
RNF20Q5VTR2 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF20Q5VTR2 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 TREML5P-201ENST00000421694 576 ntBASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC092580.3-201ENST00000430932 139 ntBASIC18.68■□□□□ 0.58
RNF20Q5VTR2 RPL13P2-201ENST00000440687 659 ntBASIC18.68■□□□□ 0.58
RNF20Q5VTR2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC097493.3-201ENST00000509725 367 ntBASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 ZNF890P-202ENST00000530367 1156 ntBASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF20Q5VTR2 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF20Q5VTR2 AL133267.1-201ENST00000398220 340 ntBASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms