Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 AC131212.3-201ENST00000624087 4219 ntBASIC11.84□□□□□ -0.51
HLA-DQA1P01909 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DQA1P01909 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.51
HLA-DQA1P01909 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.83□□□□□ -0.51
HLA-DQA1P01909 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
HLA-DQA1P01909 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
HLA-DQA1P01909 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 TOB2P1-201ENST00000469761 992 ntBASIC11.83□□□□□ -0.52
HLA-DQA1P01909 IL11-204ENST00000590625 1028 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC011467.2-201ENST00000598425 242 ntBASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 GALC-206ENST00000544807 2528 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HLA-DQA1P01909 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DQA1P01909 GID4-202ENST00000376345 1391 ntTSL 3 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms