Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.13■□□□□ 0.33
HTTP42858 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HTTP42858 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.12■□□□□ 0.33
HTTP42858 IL9RP3-201ENST00000442856 1674 ntBASIC17.12■□□□□ 0.33
HTTP42858 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 ACTBP7-201ENST00000418351 1124 ntBASIC17.12■□□□□ 0.33
HTTP42858 VDAC1P1-201ENST00000439229 848 ntBASIC17.12■□□□□ 0.33
HTTP42858 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HTTP42858 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 MIR4522-201ENST00000584932 87 ntBASIC17.12■□□□□ 0.33
HTTP42858 AC138466.3-201ENST00000619983 221 ntBASIC17.12■□□□□ 0.33
HTTP42858 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
HTTP42858 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.12■□□□□ 0.33
HTTP42858 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HTTP42858 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.12■□□□□ 0.33
HTTP42858 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 AC012158.2-201ENST00000536546 354 ntBASIC17.12■□□□□ 0.33
HTTP42858 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.12■□□□□ 0.33
HTTP42858 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.12■□□□□ 0.33
HTTP42858 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.12■□□□□ 0.33
HTTP42858 ALG1L6P-201ENST00000515248 758 ntBASIC17.12■□□□□ 0.33
HTTP42858 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC17.12■□□□□ 0.33
HTTP42858 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.12■□□□□ 0.33
HTTP42858 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
HTTP42858 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HTTP42858 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HTTP42858 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.11■□□□□ 0.33
HTTP42858 AL512430.1-201ENST00000392575 860 ntBASIC17.11■□□□□ 0.33
HTTP42858 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HTTP42858 AC138466.4-201ENST00000623965 852 ntBASIC17.11■□□□□ 0.33
HTTP42858 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HTTP42858 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HTTP42858 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.11■□□□□ 0.33
HTTP42858 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC17.11■□□□□ 0.33
HTTP42858 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.11■□□□□ 0.33
HTTP42858 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.11■□□□□ 0.33
HTTP42858 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.11■□□□□ 0.33
HTTP42858 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
HTTP42858 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HTTP42858 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HTTP42858 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 AC018463.1-201ENST00000456674 917 ntBASIC17.1■□□□□ 0.33
HTTP42858 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 AC084781.1-201ENST00000613737 656 ntBASIC17.1■□□□□ 0.33
HTTP42858 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 LYPLA2P1-203ENST00000447689 696 ntBASIC17.1■□□□□ 0.33
HTTP42858 AC090857.1-201ENST00000527400 390 ntBASIC17.1■□□□□ 0.33
HTTP42858 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.1■□□□□ 0.33
HTTP42858 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms