Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.19□□□□□ -0.3
ABCA1O95477 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.19□□□□□ -0.3
ABCA1O95477 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 U82695.1-201ENST00000635752 1889 ntBASIC13.19□□□□□ -0.3
ABCA1O95477 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ABCA1O95477 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ABCA1O95477 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.19□□□□□ -0.3
ABCA1O95477 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.19□□□□□ -0.3
ABCA1O95477 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 PCGF3-213ENST00000620529 1899 ntBASIC13.18□□□□□ -0.3
ABCA1O95477 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 ELK2AP-201ENST00000392510 1007 ntBASIC13.18□□□□□ -0.3
ABCA1O95477 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 RPL13AP25-201ENST00000484130 612 ntBASIC13.18□□□□□ -0.3
ABCA1O95477 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.18□□□□□ -0.3
ABCA1O95477 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.18□□□□□ -0.3
ABCA1O95477 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.18□□□□□ -0.3
ABCA1O95477 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 AL391256.1-201ENST00000443260 1855 ntBASIC13.18□□□□□ -0.3
ABCA1O95477 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.18□□□□□ -0.3
ABCA1O95477 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.18□□□□□ -0.3
ABCA1O95477 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.18□□□□□ -0.3
ABCA1O95477 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 AC009542.2-202ENST00000619004 1067 ntBASIC13.18□□□□□ -0.3
ABCA1O95477 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
ABCA1O95477 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ABCA1O95477 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ABCA1O95477 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.18□□□□□ -0.3
ABCA1O95477 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
ABCA1O95477 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.17□□□□□ -0.3
ABCA1O95477 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
ABCA1O95477 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.17□□□□□ -0.3
ABCA1O95477 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.17□□□□□ -0.3
ABCA1O95477 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ABCA1O95477 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
ABCA1O95477 AC010491.1-201ENST00000563101 2797 ntBASIC13.17□□□□□ -0.3
ABCA1O95477 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
ABCA1O95477 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
ABCA1O95477 DOC2GP-204ENST00000639052 2548 ntBASIC13.17□□□□□ -0.3
ABCA1O95477 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.17□□□□□ -0.3
ABCA1O95477 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms