Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.04■□□□□ -0
MSX2P35548 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.04■□□□□ -0
MSX2P35548 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.04■□□□□ -0
MSX2P35548 AL078644.1-201ENST00000609881 752 ntBASIC15.04■□□□□ -0
MSX2P35548 MIR1199-201ENST00000621445 119 ntBASIC15.04■□□□□ -0
MSX2P35548 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
MSX2P35548 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
MSX2P35548 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.04■□□□□ -0
MSX2P35548 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
MSX2P35548 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.04■□□□□ -0
MSX2P35548 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
MSX2P35548 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
MSX2P35548 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
MSX2P35548 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MSX2P35548 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.03■□□□□ -0
MSX2P35548 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.03■□□□□ -0
MSX2P35548 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.03■□□□□ -0
MSX2P35548 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.03■□□□□ -0
MSX2P35548 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.03■□□□□ -0
MSX2P35548 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
MSX2P35548 AC012640.2-201ENST00000561606 901 ntBASIC15.03■□□□□ -0
MSX2P35548 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.03■□□□□ -0
MSX2P35548 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.03■□□□□ -0
MSX2P35548 AL645728.2-201ENST00000641974 660 ntBASIC15.03■□□□□ -0
MSX2P35548 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MSX2P35548 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.03■□□□□ -0
MSX2P35548 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX2P35548 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.02■□□□□ -0
MSX2P35548 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
MSX2P35548 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.02■□□□□ -0
MSX2P35548 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.02■□□□□ -0
MSX2P35548 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
MSX2P35548 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
MSX2P35548 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.02■□□□□ -0
MSX2P35548 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 AL928921.2-201ENST00000641325 2442 ntBASIC15.02■□□□□ -0
MSX2P35548 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.02■□□□□ -0
MSX2P35548 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
MSX2P35548 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.02■□□□□ -0
MSX2P35548 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.02■□□□□ -0
MSX2P35548 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.02■□□□□ -0
MSX2P35548 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.02■□□□□ -0
MSX2P35548 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
MSX2P35548 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.02■□□□□ -0
MSX2P35548 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.02■□□□□ -0
MSX2P35548 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX2P35548 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.02■□□□□ -0
MSX2P35548 AL121772.3-201ENST00000610840 674 ntBASIC15.02■□□□□ -0
MSX2P35548 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms