Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.213e-6■■■■■ 100
SF3B1O75533 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.15□□□□□ -1.423e-6■■■■■ 100
SF3B1O75533 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.2□□□□□ -1.583e-6■■■■■ 100
SF3B1O75533 CLEC16A-209ENST00000465491 1103 ntTSL 316.6■□□□□ 0.255e-6■■■■■ 100
SF3B1O75533 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.313e-6■■■■■ 100
SF3B1O75533 EIF4B-203ENST00000420463 1936 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.372e-6■■■■■ 100
SF3B1O75533 CLEC16A-211ENST00000487189 532 ntTSL 311.83□□□□□ -0.525e-6■■■■■ 100
SF3B1O75533 EIF4B-202ENST00000416762 1985 ntTSL 2 BASIC11.77□□□□□ -0.522e-6■■■■■ 100
SF3B1O75533 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.623e-6■■■■■ 100
SF3B1O75533 CLEC16A-207ENST00000463459 578 ntTSL 410.78□□□□□ -0.685e-6■■■■■ 100
SF3B1O75533 CLEC16A-210ENST00000476025 530 ntTSL 49.91□□□□□ -0.825e-6■■■■■ 100
SF3B1O75533 CLEC16A-208ENST00000463896 4092 ntTSL 28.66□□□□□ -1.025e-6■■■■■ 100
SF3B1O75533 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.112e-6■■■■■ 100
SF3B1O75533 LETMD1-224ENST00000550446 562 ntTSL 320.92■□□□□ 0.942e-7■■■■■ 99.9
SF3B1O75533 LETMD1-220ENST00000549686 563 ntTSL 218.54■□□□□ 0.562e-7■■■■■ 99.9
SF3B1O75533 LETMD1-230ENST00000551477 1186 ntTSL 318.53■□□□□ 0.562e-7■■■■■ 99.9
SF3B1O75533 CLCN7-208ENST00000564968 652 ntTSL 417.67■□□□□ 0.421e-24■■■■■ 99.9
SF3B1O75533 LETMD1-202ENST00000380135 1566 ntTSL 317.52■□□□□ 0.42e-7■■■■■ 99.9
SF3B1O75533 LETMD1-210ENST00000547555 1658 ntTSL 517.48■□□□□ 0.392e-7■■■■■ 99.9
SF3B1O75533 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.07■□□□□ 0.322e-6■■■■■ 99.9
SF3B1O75533 CLCN7-206ENST00000563822 851 ntTSL 516.11■□□□□ 0.171e-24■■■■■ 99.9
SF3B1O75533 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.03■□□□□ 0.162e-7■■■■■ 99.9
SF3B1O75533 LETMD1-212ENST00000547877 2020 ntTSL 515.86■□□□□ 0.132e-7■■■■■ 99.9
SF3B1O75533 BRCA1-223ENST00000494123 1612 ntTSL 1 (best)15.69■□□□□ 0.11e-9■■■■■ 99.9
SF3B1O75533 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.074e-6■■■■■ 99.9
SF3B1O75533 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.052e-7■■■■■ 99.9
SF3B1O75533 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.35■□□□□ 0.052e-7■■■■■ 99.9
SF3B1O75533 LETMD1-218ENST00000549340 818 ntTSL 515.23■□□□□ 0.032e-7■■■■■ 99.9
SF3B1O75533 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.21■□□□□ 0.022e-7■■■■■ 99.9
SF3B1O75533 LETMD1-209ENST00000547318 2001 ntTSL 1 (best)15.15■□□□□ 0.022e-7■■■■■ 99.9
SF3B1O75533 BRCA1-209ENST00000470026 2108 ntTSL 1 (best)14.07□□□□□ -0.161e-9■■■■■ 99.9
SF3B1O75533 LETMD1-221ENST00000550100 1480 ntTSL 212.88□□□□□ -0.352e-7■■■■■ 99.9
SF3B1O75533 BRCA1-213ENST00000476777 769 ntTSL 512.65□□□□□ -0.381e-9■■■■■ 99.9
SF3B1O75533 LETMD1-223ENST00000550442 469 ntTSL 412.31□□□□□ -0.442e-7■■■■■ 99.9
SF3B1O75533 BRCA1-222ENST00000493919 1948 ntTSL 211.91□□□□□ -0.51e-9■■■■■ 99.9
SF3B1O75533 LETMD1-213ENST00000548209 568 ntTSL 411.06□□□□□ -0.642e-7■■■■■ 99.9
SF3B1O75533 LETMD1-234ENST00000552645 1623 ntTSL 1 (best)10.73□□□□□ -0.692e-7■■■■■ 99.9
SF3B1O75533 LETMD1-217ENST00000548516 850 ntTSL 510.36□□□□□ -0.752e-7■■■■■ 99.9
SF3B1O75533 LETMD1-228ENST00000550929 1389 ntTSL 1 (best) BASIC9.96□□□□□ -0.822e-7■■■■■ 99.9
SF3B1O75533 DROSHA-215ENST00000512076 1124 ntTSL 1 (best)9.21□□□□□ -0.942e-6■■■■■ 99.9
SF3B1O75533 LETMD1-214ENST00000548251 582 ntTSL 38.4□□□□□ -1.062e-7■■■■■ 99.9
SF3B1O75533 LETMD1-225ENST00000550715 907 ntTSL 28.23□□□□□ -1.092e-7■■■■■ 99.9
SF3B1O75533 BRCA1-214ENST00000477152 1980 ntTSL 1 (best)8.01□□□□□ -1.131e-9■■■■■ 99.9
SF3B1O75533 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.182e-6■■■■■ 99.9
SF3B1O75533 LETMD1-208ENST00000547256 618 ntTSL 27.52□□□□□ -1.212e-7■■■■■ 99.9
SF3B1O75533 BRCA1-215ENST00000478531 1972 ntTSL 1 (best)7.49□□□□□ -1.211e-9■■■■■ 99.9
SF3B1O75533 BRCA1-230ENST00000634433 2534 ntTSL 57.39□□□□□ -1.231e-9■■■■■ 99.9
SF3B1O75533 LETMD1-207ENST00000547029 455 ntTSL 46.45□□□□□ -1.382e-7■■■■■ 99.9
SF3B1O75533 BRCA1-224ENST00000497488 779 ntTSL 1 (best)5.75□□□□□ -1.491e-9■■■■■ 99.9
SF3B1O75533 LETMD1-211ENST00000547660 601 ntTSL 45.34□□□□□ -1.552e-7■■■■■ 99.9
SF3B1O75533 LETMD1-227ENST00000550814 565 ntTSL 44.81□□□□□ -1.642e-7■■■■■ 99.9
SF3B1O75533 BRCA1-220ENST00000492859 1584 ntTSL 1 (best)4.06□□□□□ -1.761e-9■■■■■ 99.9
SF3B1O75533 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.46□□□□□ -2.181e-9■■■■■ 99.9
SF3B1O75533 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.422e-6■■■■■ 99.9
SF3B1O75533 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.222e-6■■■■■ 99.9
SF3B1O75533 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.34■□□□□ 0.212e-6■■■■■ 99.9
SF3B1O75533 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.142e-6■■■■■ 99.9
SF3B1O75533 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.849e-7■■■■■ 99.9
SF3B1O75533 KLF16-202ENST00000541015 1134 ntTSL 1 (best)24.37■■□□□ 1.499e-7■■■■■ 99.9
SF3B1O75533 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.839e-7■■■■■ 99.9
SF3B1O75533 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC12.36□□□□□ -0.432e-6■■■■■ 99.9
SF3B1O75533 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.34□□□□□ -1.712e-6■■■■■ 99.9
SF3B1O75533 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.53■□□□□ 0.42e-6■■■■■ 99.9
SF3B1O75533 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.252e-6■■■■■ 99.9
SF3B1O75533 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC14.16□□□□□ -0.147e-6■■■■■ 99.8
SF3B1O75533 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.145e-7■■■■■ 99.8
SF3B1O75533 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.22■■□□□ 1.315e-7■■■■■ 99.8
SF3B1O75533 SRPK2-212ENST00000482897 715 ntTSL 523.27■■□□□ 1.324e-6■■■■■ 99.8
SF3B1O75533 SRPK2-203ENST00000460391 666 ntTSL 215.12■□□□□ 0.014e-6■■■■■ 99.8
SF3B1O75533 SRPK2-202ENST00000393651 3650 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.824e-6■■■■■ 99.8
SF3B1O75533 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.283e-6■■■■■ 99.8
SF3B1O75533 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.413e-6■■■■■ 99.8
SF3B1O75533 TMEM164-202ENST00000372068 5566 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.483e-6■■■■■ 99.8
SF3B1O75533 TMEM164-201ENST00000288381 5452 ntTSL 5 BASIC11.21□□□□□ -0.623e-6■■■■■ 99.8
SF3B1O75533 IGF2BP2-203ENST00000421047 1711 ntTSL 1 (best) BASIC13.78□□□□□ -0.24e-6■■■■■ 99.7
SF3B1O75533 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.382e-6■■■■■ 99.7
SF3B1O75533 RAB28-206ENST00000510528 193 ntTSL 53.52□□□□□ -1.852e-6■■■■■ 99.7
SF3B1O75533 NR2C1-218ENST00000552861 2499 ntTSL 214.62□□□□□ -0.075e-6■■■■■ 99.7
SF3B1O75533 NR2C1-202ENST00000333003 4143 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.825e-6■■■■■ 99.7
SF3B1O75533 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.952e-6■■■■■ 99.6
SF3B1O75533 PCGF3-205ENST00000430644 2621 ntTSL 218.1■□□□□ 0.492e-6■■■■■ 99.6
SF3B1O75533 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.42e-6■■■■■ 99.6
SF3B1O75533 PCGF3-207ENST00000440452 3609 ntTSL 212.59□□□□□ -0.392e-6■■■■■ 99.6
SF3B1O75533 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.043e-6■■■■■ 99.6
SF3B1O75533 CENPT-201ENST00000436104 1990 ntTSL 221.21■□□□□ 0.991e-6■■■■■ 99.6
SF3B1O75533 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.94■□□□□ 0.943e-6■■■■■ 99.6
SF3B1O75533 ZNF787-201ENST00000586787 386 ntTSL 1 (best)20.32■□□□□ 0.841e-6■■■■■ 99.6
SF3B1O75533 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.781e-6■■■■■ 99.6
SF3B1O75533 CENPT-207ENST00000562513 1669 ntTSL 519.83■□□□□ 0.761e-6■■■■■ 99.6
SF3B1O75533 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.683e-6■■■■■ 99.6
SF3B1O75533 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.663e-6■■■■■ 99.6
SF3B1O75533 CENPT-210ENST00000563885 1931 ntTSL 519.15■□□□□ 0.661e-6■■■■■ 99.6
SF3B1O75533 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.19■□□□□ 0.53e-6■■■■■ 99.6
SF3B1O75533 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.77■□□□□ 0.281e-6■■■■■ 99.6
SF3B1O75533 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.171e-6■■■■■ 99.6
SF3B1O75533 TPD52L1-210ENST00000532423 507 ntTSL 215.39■□□□□ 0.056e-11■■■■■ 99.6
SF3B1O75533 CENPT-218ENST00000565157 2133 ntTSL 215.31■□□□□ 0.041e-6■■■■■ 99.6
SF3B1O75533 TPD52L1-209ENST00000530868 650 ntTSL 314.83□□□□□ -0.046e-11■■■■■ 99.6
SF3B1O75533 CENPT-233ENST00000569862 2957 ntTSL 213.92□□□□□ -0.181e-6■■■■■ 99.6
SF3B1O75533 MDN1-202ENST00000439638 3654 ntTSL 513.83□□□□□ -0.193e-6■■■■■ 99.6
Retrieved 100 of 46,956 protein–RNA pairs in 1361 ms