RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 AEBP2Q6ZN18 517 aaPredicted RBP7.34□□□□□ -1.23
BRCA1-202ENST00000354071 CHIC1Q5VXU3 224 aa6.98□□□□□ -1.29
BRCA1-202ENST00000354071 PHF23Q9BUL5 403 aaPredicted RBP6.34□□□□□ -1.39
BRCA1-202ENST00000354071 SENP3Q9H4L4 574 aaPredicted RBP5.88□□□□□ -1.47
BRCA1-202ENST00000354071 FOXD1Q16676 465 aa5.66□□□□□ -1.5
BRCA1-202ENST00000354071 PPP6R1Q9UPN7 881 aa5.55□□□□□ -1.52
BRCA1-202ENST00000354071 PLPPR3Q6T4P5 718 aa5.51□□□□□ -1.53
BRCA1-202ENST00000354071 ADRA2BP18089 450 aa5.4□□□□□ -1.55
BRCA1-202ENST00000354071 PIAS4Q8N2W9 510 aaPredicted RBP5.11□□□□□ -1.59
BRCA1-202ENST00000354071 MSH5O43196 834 aa4.99□□□□□ -1.61
BRCA1-202ENST00000354071 MAPK8IP2Q13387 824 aaPredicted RBP4.93□□□□□ -1.62
BRCA1-202ENST00000354071 DNAJC5BQ9UF47 199 aa4.92□□□□□ -1.62
BRCA1-202ENST00000354071 PPP4R3CPQ6ZMV5 832 aa4.9□□□□□ -1.63
BRCA1-202ENST00000354071 KCNA4P22459 653 aa4.89□□□□□ -1.63
BRCA1-202ENST00000354071 POTEDQ86YR6 584 aa4.85□□□□□ -1.63
BRCA1-202ENST00000354071 DMRT2Q9Y5R5 561 aa4.83□□□□□ -1.64
BRCA1-202ENST00000354071 NPM3O75607 178 aaKnown RBP4.81□□□□□ -1.64
BRCA1-202ENST00000354071 HOXD11P31277 338 aaPredicted RBP4.8□□□□□ -1.64
BRCA1-202ENST00000354071 CNKSR2Q8WXI2 1034 aa4.74□□□□□ -1.65
BRCA1-202ENST00000354071 RNF216Q9NWF9 866 aaPredicted RBP4.72□□□□□ -1.65
BRCA1-202ENST00000354071 ZBTB22O15209 634 aa4.71□□□□□ -1.66
BRCA1-202ENST00000354071 SLC4A2P04920 1241 aa4.66□□□□□ -1.66
BRCA1-202ENST00000354071 SCAF1Q9H7N4 1312 aaKnown RBP4.6□□□□□ -1.67
BRCA1-202ENST00000354071 EHMT2Q96KQ7 1210 aa4.59□□□□□ -1.68
BRCA1-202ENST00000354071 CSRNP3Q8WYN3 585 aa4.54□□□□□ -1.68
BRCA1-202ENST00000354071 NCBP3Q53F19 620 aaKnown RBP4.53□□□□□ -1.68
BRCA1-202ENST00000354071 RNF39Q9H2S5 420 aa4.48□□□□□ -1.69
BRCA1-202ENST00000354071 U3KPZ7 1027 aaPredicted RBP4.46□□□□□ -1.69
BRCA1-202ENST00000354071 SLC4A1APQ9BWU0 796 aaKnown RBP4.46□□□□□ -1.7
BRCA1-202ENST00000354071 ATF5Q9Y2D1 282 aaPredicted RBP4.45□□□□□ -1.7
BRCA1-202ENST00000354071 FOXD4L1Q9NU39 408 aa4.36□□□□□ -1.71
BRCA1-202ENST00000354071 SPINK5Q9NQ38 1064 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-202ENST00000354071 MYCNP04198 464 aaPredicted RBP4.28□□□□□ -1.72
BRCA1-202ENST00000354071 C1QBPQ07021 282 aaKnown RBP4.26□□□□□ -1.73
BRCA1-202ENST00000354071 MKRN4PQ13434 485 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-202ENST00000354071 ATXN8OSP0DMR3 200 aa4.26□□□□□ -1.73
BRCA1-202ENST00000354071 DSG3P32926 999 aa4.24□□□□□ -1.73
BRCA1-202ENST00000354071 PROM2Q8N271 834 aa4.19□□□□□ -1.74
BRCA1-202ENST00000354071 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.18□□□□□ -1.741e-6■■■□□ 18.6
BRCA1-202ENST00000354071 DCAF8L1A6NGE4 600 aa4.17□□□□□ -1.74
BRCA1-202ENST00000354071 ZNF219Q9P2Y4 722 aaPredicted RBP4.14□□□□□ -1.75
BRCA1-202ENST00000354071 SAMD1Q6SPF0 538 aaPredicted RBP4.13□□□□□ -1.75
BRCA1-202ENST00000354071 RTN4Q9NQC3 1192 aaKnown RBP4.1□□□□□ -1.75
BRCA1-202ENST00000354071 CACNB1Q02641 598 aaPredicted RBP4.08□□□□□ -1.76
BRCA1-202ENST00000354071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.07□□□□□ -1.76
BRCA1-202ENST00000354071 HNRNPUL2Q1KMD3 747 aaKnown RBP4.07□□□□□ -1.76
BRCA1-202ENST00000354071 POLA2Q14181 598 aa4.06□□□□□ -1.76
BRCA1-202ENST00000354071 SLC24A1O60721 1099 aa4.04□□□□□ -1.76
BRCA1-202ENST00000354071 SSUH2Q9Y2M2 353 aa4.03□□□□□ -1.76
BRCA1-202ENST00000354071 ABCB7O75027 752 aa4.01□□□□□ -1.77
BRCA1-202ENST00000354071 CAPN15O75808 1086 aa3.98□□□□□ -1.77
BRCA1-202ENST00000354071 TRHP20396 242 aaPredicted RBP3.98□□□□□ -1.77
BRCA1-202ENST00000354071 OSCARQ8IYS5 282 aa3.97□□□□□ -1.77
BRCA1-202ENST00000354071 MNX1P50219 401 aaPredicted RBP3.95□□□□□ -1.78
BRCA1-202ENST00000354071 APLP2Q06481 763 aa3.91□□□□□ -1.78
BRCA1-202ENST00000354071 AMER1Q5JTC6 1135 aaPredicted RBP3.91□□□□□ -1.78
BRCA1-202ENST00000354071 FKBP8Q14318 412 aa3.91□□□□□ -1.78
BRCA1-202ENST00000354071 DNAJC5Q9H3Z4 198 aa3.89□□□□□ -1.79
BRCA1-202ENST00000354071 SPDYE4A6NLX3 237 aa3.86□□□□□ -1.79
BRCA1-202ENST00000354071 SPDYE2BA6NHP3 402 aa3.86□□□□□ -1.79
BRCA1-202ENST00000354071 SPDYE6P0CI01 402 aa3.86□□□□□ -1.79
BRCA1-202ENST00000354071 SPDYE2Q495Y8 402 aa3.86□□□□□ -1.79
BRCA1-202ENST00000354071 REM2Q8IYK8 340 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-202ENST00000354071 FXR2P51116 673 aaKnown RBP eCLIP3.84□□□□□ -1.79
BRCA1-202ENST00000354071 PITPNM1O00562 1244 aa3.84□□□□□ -1.79
BRCA1-202ENST00000354071 ZBTB12Q9Y330 459 aaPredicted RBP3.84□□□□□ -1.8
BRCA1-202ENST00000354071 AKT1S1Q96B36 256 aa3.83□□□□□ -1.8
BRCA1-202ENST00000354071 IFNLR1Q8IU57 520 aaPredicted RBP3.83□□□□□ -1.8
BRCA1-202ENST00000354071 CREBZFQ9NS37 354 aa3.82□□□□□ -1.8
BRCA1-202ENST00000354071 PABPN1Q86U42 306 aaKnown RBP eCLIP3.78□□□□□ -1.8
BRCA1-202ENST00000354071 EVX2Q03828 476 aa3.77□□□□□ -1.81
BRCA1-202ENST00000354071 PIP4P2Q8N4L2 257 aa3.77□□□□□ -1.81
BRCA1-202ENST00000354071 FBLN2P98095 1184 aa3.77□□□□□ -1.81
BRCA1-202ENST00000354071 ZNF692Q9BU19 519 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-202ENST00000354071 NUBP1P53384 320 aa3.75□□□□□ -1.81
BRCA1-202ENST00000354071 PRKCSHP14314 528 aaPredicted RBP3.74□□□□□ -1.81
BRCA1-202ENST00000354071 PKD2Q13563 968 aa3.74□□□□□ -1.81
BRCA1-202ENST00000354071 POTEHQ6S545 545 aa3.74□□□□□ -1.81
BRCA1-202ENST00000354071 RBM42Q9BTD8 480 aaKnown RBP3.73□□□□□ -1.81
BRCA1-202ENST00000354071 VASPP50552 380 aaPredicted RBP3.72□□□□□ -1.81
BRCA1-202ENST00000354071 RNF25Q96BH1 459 aaPredicted RBP3.72□□□□□ -1.81
BRCA1-202ENST00000354071 CHRDL2Q6WN34 429 aa3.72□□□□□ -1.81
BRCA1-202ENST00000354071 C19orf67A6NJJ6 358 aa3.69□□□□□ -1.82
BRCA1-202ENST00000354071 CCDC61Q9Y6R9 512 aa3.69□□□□□ -1.82
BRCA1-202ENST00000354071 RASEFQ8IZ41 740 aa3.68□□□□□ -1.82
BRCA1-202ENST00000354071 PLCB2Q00722 1185 aa3.67□□□□□ -1.82
BRCA1-202ENST00000354071 ILDR1Q86SU0 546 aaPredicted RBP3.67□□□□□ -1.82
BRCA1-202ENST00000354071 CHADLQ6NUI6 762 aa3.66□□□□□ -1.82
BRCA1-202ENST00000354071 SPDYE1Q8NFV5 336 aaPredicted RBP3.65□□□□□ -1.83
BRCA1-202ENST00000354071 HAP1P54257 671 aaPredicted RBP3.64□□□□□ -1.83
BRCA1-202ENST00000354071 FARP1Q9Y4F1 1045 aaPredicted RBP3.64□□□□□ -1.83
BRCA1-202ENST00000354071 DCAF8L2P0C7V8 631 aa3.64□□□□□ -1.83
BRCA1-202ENST00000354071 POTEIP0CG38 1075 aa3.64□□□□□ -1.83
BRCA1-202ENST00000354071 STAG3Q9UJ98 1225 aa3.63□□□□□ -1.83
BRCA1-202ENST00000354071 NPM1P06748 294 aaKnown RBP eCLIP3.61□□□□□ -1.83
BRCA1-202ENST00000354071 CHRM1P11229 460 aaPredicted RBP3.61□□□□□ -1.83
BRCA1-202ENST00000354071 PRKAR2AP13861 404 aaKnown RBP3.61□□□□□ -1.83
BRCA1-202ENST00000354071 TRPC6Q9Y210 931 aa3.61□□□□□ -1.83
BRCA1-202ENST00000354071 POTEFA5A3E0 1075 aa3.6□□□□□ -1.83
BRCA1-202ENST00000354071 KDM2AQ9Y2K7 1162 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms