RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 AEBP2Q6ZN18 517 aaPredicted RBP19.83■□□□□ 0.77
BRCA1-224ENST00000497488 CHIC1Q5VXU3 224 aa19.17■□□□□ 0.66
BRCA1-224ENST00000497488 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-224ENST00000497488 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
BRCA1-224ENST00000497488 FOXD1Q16676 465 aa15.62■□□□□ 0.09
BRCA1-224ENST00000497488 PLPPR3Q6T4P5 718 aa15.45■□□□□ 0.06
BRCA1-224ENST00000497488 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
BRCA1-224ENST00000497488 ADRA2BP18089 450 aa14.92□□□□□ -0.02
BRCA1-224ENST00000497488 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
BRCA1-224ENST00000497488 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-224ENST00000497488 KCNA4P22459 653 aa14.43□□□□□ -0.1
BRCA1-224ENST00000497488 MSH5O43196 834 aa14.37□□□□□ -0.11
BRCA1-224ENST00000497488 SLC24A1O60721 1099 aa14.2□□□□□ -0.14
BRCA1-224ENST00000497488 CSRNP3Q8WYN3 585 aa14.16□□□□□ -0.14
BRCA1-224ENST00000497488 SLC4A1APQ9BWU0 796 aaKnown RBP13.92□□□□□ -0.18
BRCA1-224ENST00000497488 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
BRCA1-224ENST00000497488 RTN4Q9NQC3 1192 aaKnown RBP13.64□□□□□ -0.23
BRCA1-224ENST00000497488 MAPK8IP2Q13387 824 aaPredicted RBP13.6□□□□□ -0.23
BRCA1-224ENST00000497488 AMER1Q5JTC6 1135 aaPredicted RBP13.58□□□□□ -0.24
BRCA1-224ENST00000497488 SCAF1Q9H7N4 1312 aaKnown RBP13.52□□□□□ -0.25
BRCA1-224ENST00000497488 POTEDQ86YR6 584 aa13.39□□□□□ -0.27
BRCA1-224ENST00000497488 NCBP3Q53F19 620 aaKnown RBP13.37□□□□□ -0.27
BRCA1-224ENST00000497488 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
BRCA1-224ENST00000497488 ZBTB22O15209 634 aa13.32□□□□□ -0.28
BRCA1-224ENST00000497488 CNKSR2Q8WXI2 1034 aa13.26□□□□□ -0.29
BRCA1-224ENST00000497488 NPM3O75607 178 aaKnown RBP13.22□□□□□ -0.29
BRCA1-224ENST00000497488 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-224ENST00000497488 RNF216Q9NWF9 866 aaPredicted RBP13.04□□□□□ -0.32
BRCA1-224ENST00000497488 FOXD4L1Q9NU39 408 aa12.93□□□□□ -0.34
BRCA1-224ENST00000497488 DCAF8L1A6NGE4 600 aa12.76□□□□□ -0.37
BRCA1-224ENST00000497488 FKBP8Q14318 412 aa12.71□□□□□ -0.37
BRCA1-224ENST00000497488 DNAJC5BQ9UF47 199 aa12.69□□□□□ -0.38
BRCA1-224ENST00000497488 PLCB2Q00722 1185 aa12.48□□□□□ -0.41
BRCA1-224ENST00000497488 PRKCSHP14314 528 aaPredicted RBP12.45□□□□□ -0.42
BRCA1-224ENST00000497488 SLC4A2P04920 1241 aa12.41□□□□□ -0.42
BRCA1-224ENST00000497488 BCANQ96GW7 911 aa12.4□□□□□ -0.42
BRCA1-224ENST00000497488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.39□□□□□ -0.431e-6■■■□□ 18.6
BRCA1-224ENST00000497488 ATXN8OSP0DMR3 200 aa12.37□□□□□ -0.43
BRCA1-224ENST00000497488 RNF39Q9H2S5 420 aa12.36□□□□□ -0.43
BRCA1-224ENST00000497488 TAOK2Q9UL54 1235 aa12.35□□□□□ -0.43
BRCA1-224ENST00000497488 HAP1P54257 671 aaPredicted RBP12.29□□□□□ -0.44
BRCA1-224ENST00000497488 U3KPZ7 1027 aaPredicted RBP12.24□□□□□ -0.45
BRCA1-224ENST00000497488 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
BRCA1-224ENST00000497488 C1QBPQ07021 282 aaKnown RBP12.16□□□□□ -0.46
BRCA1-224ENST00000497488 VSIG10Q8N0Z9 540 aa12.14□□□□□ -0.47
BRCA1-224ENST00000497488 TPRNQ4KMQ1 711 aa12.12□□□□□ -0.47
BRCA1-224ENST00000497488 CACNB1Q02641 598 aaPredicted RBP12.09□□□□□ -0.47
BRCA1-224ENST00000497488 DAXXQ9UER7 740 aaPredicted RBP12.04□□□□□ -0.48
BRCA1-224ENST00000497488 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
BRCA1-224ENST00000497488 SPINK5Q9NQ38 1064 aaPredicted RBP11.95□□□□□ -0.5
BRCA1-224ENST00000497488 FBXO3Q9UK99 471 aa11.92□□□□□ -0.5
BRCA1-224ENST00000497488 TIMELESSQ9UNS1 1208 aa11.92□□□□□ -0.5
BRCA1-224ENST00000497488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.91□□□□□ -0.5
BRCA1-224ENST00000497488 HNRNPUL2Q1KMD3 747 aaKnown RBP11.91□□□□□ -0.5
BRCA1-224ENST00000497488 SAMD1Q6SPF0 538 aaPredicted RBP11.9□□□□□ -0.5
BRCA1-224ENST00000497488 KDM2AQ9Y2K7 1162 aa11.9□□□□□ -0.5
BRCA1-224ENST00000497488 ARXQ96QS3 562 aa11.89□□□□□ -0.51
BRCA1-224ENST00000497488 CAPN15O75808 1086 aa11.84□□□□□ -0.51
BRCA1-224ENST00000497488 TULP1O00294 542 aaPredicted RBP11.83□□□□□ -0.52
BRCA1-224ENST00000497488 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
BRCA1-224ENST00000497488 FBLN2P98095 1184 aa11.8□□□□□ -0.52
BRCA1-224ENST00000497488 APLP2Q06481 763 aa11.8□□□□□ -0.52
BRCA1-224ENST00000497488 TRHP20396 242 aaPredicted RBP11.77□□□□□ -0.53
BRCA1-224ENST00000497488 VASPP50552 380 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-224ENST00000497488 PKD2Q13563 968 aa11.76□□□□□ -0.53
BRCA1-224ENST00000497488 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-224ENST00000497488 DSG3P32926 999 aa11.72□□□□□ -0.53
BRCA1-224ENST00000497488 BBXQ8WY36 941 aaPredicted RBP11.72□□□□□ -0.53
BRCA1-224ENST00000497488 ZNF219Q9P2Y4 722 aaPredicted RBP11.71□□□□□ -0.53
BRCA1-224ENST00000497488 IFNLR1Q8IU57 520 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-224ENST00000497488 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
BRCA1-224ENST00000497488 PAXIP1Q6ZW49 1069 aaPredicted RBP11.67□□□□□ -0.54
BRCA1-224ENST00000497488 ERICH6Q7L0X2 663 aa11.67□□□□□ -0.54
BRCA1-224ENST00000497488 ABCB7O75027 752 aa11.65□□□□□ -0.54
BRCA1-224ENST00000497488 CFAP44Q96MT7 982 aa11.62□□□□□ -0.55
BRCA1-224ENST00000497488 PROM2Q8N271 834 aa11.61□□□□□ -0.55
BRCA1-224ENST00000497488 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
BRCA1-224ENST00000497488 NPM1P06748 294 aaKnown RBP eCLIP11.58□□□□□ -0.56
BRCA1-224ENST00000497488 HOMEZQ8IX15 550 aa11.57□□□□□ -0.56
BRCA1-224ENST00000497488 POLA2Q14181 598 aa11.56□□□□□ -0.56
BRCA1-224ENST00000497488 TSHZ2Q9NRE2 1034 aa11.54□□□□□ -0.56
BRCA1-224ENST00000497488 NBR1Q14596 966 aa11.51□□□□□ -0.57
BRCA1-224ENST00000497488 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
BRCA1-224ENST00000497488 TMEM132AQ24JP5 1023 aa11.47□□□□□ -0.57
BRCA1-224ENST00000497488 ECM2O94769 699 aaPredicted RBP11.44□□□□□ -0.58
BRCA1-224ENST00000497488 DNAJC5Q9H3Z4 198 aa11.44□□□□□ -0.58
BRCA1-224ENST00000497488 C14orf37Q86TY3 774 aa11.36□□□□□ -0.59
BRCA1-224ENST00000497488 MKRN4PQ13434 485 aaPredicted RBP11.35□□□□□ -0.59
BRCA1-224ENST00000497488 SPOCK2Q92563 424 aa11.35□□□□□ -0.59
BRCA1-224ENST00000497488 RGL2O15211 777 aa11.32□□□□□ -0.6
BRCA1-224ENST00000497488 ZBTB12Q9Y330 459 aaPredicted RBP11.27□□□□□ -0.61
BRCA1-224ENST00000497488 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
BRCA1-224ENST00000497488 CHGAP10645 457 aaKnown RBP11.21□□□□□ -0.61
BRCA1-224ENST00000497488 OSCARQ8IYS5 282 aa11.19□□□□□ -0.62
BRCA1-224ENST00000497488 RANGAP1P46060 587 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-224ENST00000497488 PODXL2Q9NZ53 605 aa11.11□□□□□ -0.63
BRCA1-224ENST00000497488 RBM42Q9BTD8 480 aaKnown RBP11.08□□□□□ -0.64
BRCA1-224ENST00000497488 HS6ST3Q8IZP7 471 aa11.06□□□□□ -0.64
BRCA1-224ENST00000497488 SUPT5HO00267 1087 aaKnown RBP11.03□□□□□ -0.64
BRCA1-224ENST00000497488 SPDYE2BA6NHP3 402 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms