RNA–Protein interactions for RNA: ENST00000550715.5

LETMD1-225, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 907 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-225ENST00000550715 AEBP2Q6ZN18 517 aaPredicted RBP27.3■■□□□ 1.96
LETMD1-225ENST00000550715 CHIC1Q5VXU3 224 aa27.05■■□□□ 1.92
LETMD1-225ENST00000550715 PHF23Q9BUL5 403 aaPredicted RBP23.88■■□□□ 1.41
LETMD1-225ENST00000550715 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
LETMD1-225ENST00000550715 PLPPR3Q6T4P5 718 aa22.15■■□□□ 1.14
LETMD1-225ENST00000550715 FOXD1Q16676 465 aa21.35■■□□□ 1.01
LETMD1-225ENST00000550715 ADRA2BP18089 450 aa20.96■□□□□ 0.95
LETMD1-225ENST00000550715 PPP6R1Q9UPN7 881 aa20.93■□□□□ 0.94
LETMD1-225ENST00000550715 PIAS4Q8N2W9 510 aaPredicted RBP20.27■□□□□ 0.84
LETMD1-225ENST00000550715 KCNA4P22459 653 aa19.75■□□□□ 0.75
LETMD1-225ENST00000550715 PPP4R3CPQ6ZMV5 832 aa19.62■□□□□ 0.73
LETMD1-225ENST00000550715 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
LETMD1-225ENST00000550715 MSH5O43196 834 aa19.43■□□□□ 0.7
LETMD1-225ENST00000550715 NCBP3Q53F19 620 aaKnown RBP19.18■□□□□ 0.66
LETMD1-225ENST00000550715 SCAF1Q9H7N4 1312 aaKnown RBP19.04■□□□□ 0.64
LETMD1-225ENST00000550715 NPM3O75607 178 aaKnown RBP18.98■□□□□ 0.63
LETMD1-225ENST00000550715 EHMT2Q96KQ7 1210 aa18.96■□□□□ 0.63
LETMD1-225ENST00000550715 CNKSR2Q8WXI2 1034 aa18.92■□□□□ 0.62
LETMD1-225ENST00000550715 MAPK8IP2Q13387 824 aaPredicted RBP18.89■□□□□ 0.61
LETMD1-225ENST00000550715 SLC4A1APQ9BWU0 796 aaKnown RBP18.86■□□□□ 0.61
LETMD1-225ENST00000550715 ABCC9O60706 1549 aa18.81■□□□□ 0.6
LETMD1-225ENST00000550715 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
LETMD1-225ENST00000550715 DMRT2Q9Y5R5 561 aa18.45■□□□□ 0.54
LETMD1-225ENST00000550715 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
LETMD1-225ENST00000550715 RNF216Q9NWF9 866 aaPredicted RBP18.42■□□□□ 0.54
LETMD1-225ENST00000550715 HOXD11P31277 338 aaPredicted RBP18.22■□□□□ 0.51
LETMD1-225ENST00000550715 ZBTB22O15209 634 aa18.2■□□□□ 0.5
LETMD1-225ENST00000550715 FOXD4L1Q9NU39 408 aa17.99■□□□□ 0.47
LETMD1-225ENST00000550715 SLC4A2P04920 1241 aa17.8■□□□□ 0.44
LETMD1-225ENST00000550715 DCAF8L1A6NGE4 600 aa17.73■□□□□ 0.43
LETMD1-225ENST00000550715 CCDC180Q9P1Z9 1646 aa17.7■□□□□ 0.42
LETMD1-225ENST00000550715 DNAJC5Q9H3Z4 198 aa17.7■□□□□ 0.42
LETMD1-225ENST00000550715 MYCNP04198 464 aaPredicted RBP17.49■□□□□ 0.39
LETMD1-225ENST00000550715 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
LETMD1-225ENST00000550715 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.43■□□□□ 0.383e-14■□□□□ 10.9
LETMD1-225ENST00000550715 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
LETMD1-225ENST00000550715 ATXN8OSP0DMR3 200 aa17.23■□□□□ 0.35
LETMD1-225ENST00000550715 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
LETMD1-225ENST00000550715 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
LETMD1-225ENST00000550715 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
LETMD1-225ENST00000550715 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
LETMD1-225ENST00000550715 SAMD1Q6SPF0 538 aaPredicted RBP17.04■□□□□ 0.32
LETMD1-225ENST00000550715 DCAF8L2P0C7V8 631 aa17.03■□□□□ 0.32
LETMD1-225ENST00000550715 NACADO15069 1562 aa17.02■□□□□ 0.32
LETMD1-225ENST00000550715 CECR2Q9BXF3 1484 aa17■□□□□ 0.31
LETMD1-225ENST00000550715 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
LETMD1-225ENST00000550715 BICRAQ9NZM4 1560 aa16.98■□□□□ 0.31
LETMD1-225ENST00000550715 POTEDQ86YR6 584 aa16.95■□□□□ 0.3
LETMD1-225ENST00000550715 CC2D2AQ9P2K1 1620 aa16.88■□□□□ 0.29
LETMD1-225ENST00000550715 APLP2Q06481 763 aa16.75■□□□□ 0.27
LETMD1-225ENST00000550715 RNF39Q9H2S5 420 aa16.72■□□□□ 0.27
LETMD1-225ENST00000550715 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
LETMD1-225ENST00000550715 FKBP8Q14318 412 aa16.67■□□□□ 0.26
LETMD1-225ENST00000550715 SPINK5Q9NQ38 1064 aaPredicted RBP16.63■□□□□ 0.25
LETMD1-225ENST00000550715 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
LETMD1-225ENST00000550715 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
LETMD1-225ENST00000550715 TRIM41Q8WV44 630 aa16.56■□□□□ 0.24
LETMD1-225ENST00000550715 CAPN15O75808 1086 aa16.52■□□□□ 0.24
LETMD1-225ENST00000550715 C1QBPQ07021 282 aaKnown RBP16.51■□□□□ 0.23
LETMD1-225ENST00000550715 CUX2O14529 1486 aa16.48■□□□□ 0.23
LETMD1-225ENST00000550715 SHROOM4Q9ULL8 1493 aa16.48■□□□□ 0.23
LETMD1-225ENST00000550715 MYO15BQ96JP2 1530 aa16.46■□□□□ 0.23
LETMD1-225ENST00000550715 POLA2Q14181 598 aa16.37■□□□□ 0.21
LETMD1-225ENST00000550715 MKRN4PQ13434 485 aaPredicted RBP16.32■□□□□ 0.2
LETMD1-225ENST00000550715 ABCB7O75027 752 aa16.31■□□□□ 0.2
LETMD1-225ENST00000550715 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
LETMD1-225ENST00000550715 FBLN2P98095 1184 aa16.24■□□□□ 0.19
LETMD1-225ENST00000550715 SCRIBQ14160 1630 aa16.22■□□□□ 0.19
LETMD1-225ENST00000550715 SPDYE4A6NLX3 237 aa16.16■□□□□ 0.18
LETMD1-225ENST00000550715 DSG3P32926 999 aa16.09■□□□□ 0.17
LETMD1-225ENST00000550715 ZBTB12Q9Y330 459 aaPredicted RBP16.05■□□□□ 0.16
LETMD1-225ENST00000550715 RTN4Q9NQC3 1192 aaKnown RBP16.01■□□□□ 0.15
LETMD1-225ENST00000550715 CACNB1Q02641 598 aaPredicted RBP15.99■□□□□ 0.15
LETMD1-225ENST00000550715 AMER1Q5JTC6 1135 aaPredicted RBP15.94■□□□□ 0.14
LETMD1-225ENST00000550715 NESP48681 1621 aa15.93■□□□□ 0.14
LETMD1-225ENST00000550715 DCAF1Q9Y4B6 1507 aa15.93■□□□□ 0.14
LETMD1-225ENST00000550715 PROM2Q8N271 834 aa15.9■□□□□ 0.14
LETMD1-225ENST00000550715 ZCCHC6Q5VYS8 1495 aaKnown RBP15.88■□□□□ 0.13
LETMD1-225ENST00000550715 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
LETMD1-225ENST00000550715 FBXO3Q9UK99 471 aa15.84■□□□□ 0.13
LETMD1-225ENST00000550715 NCAPD3P42695 1498 aa15.81■□□□□ 0.12
LETMD1-225ENST00000550715 THOC2Q8NI27 1593 aaKnown RBP15.79■□□□□ 0.12
LETMD1-225ENST00000550715 ZNF692Q9BU19 519 aaPredicted RBP15.74■□□□□ 0.11
LETMD1-225ENST00000550715 SPDYE2BA6NHP3 402 aa15.69■□□□□ 0.1
LETMD1-225ENST00000550715 SPDYE6P0CI01 402 aa15.69■□□□□ 0.1
LETMD1-225ENST00000550715 SPDYE2Q495Y8 402 aa15.69■□□□□ 0.1
LETMD1-225ENST00000550715 VASPP50552 380 aaPredicted RBP15.68■□□□□ 0.1
LETMD1-225ENST00000550715 SMARCA2P51531 1590 aa15.67■□□□□ 0.1
LETMD1-225ENST00000550715 SSUH2Q9Y2M2 353 aa15.64■□□□□ 0.09
LETMD1-225ENST00000550715 ATAD2BQ9ULI0 1458 aa15.64■□□□□ 0.09
LETMD1-225ENST00000550715 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
LETMD1-225ENST00000550715 KIF21AQ7Z4S6 1674 aa15.56■□□□□ 0.08
LETMD1-225ENST00000550715 PDS5BQ9NTI5 1447 aa15.51■□□□□ 0.07
LETMD1-225ENST00000550715 LAMC3Q9Y6N6 1575 aa15.51■□□□□ 0.07
LETMD1-225ENST00000550715 IFNLR1Q8IU57 520 aaPredicted RBP15.51■□□□□ 0.07
LETMD1-225ENST00000550715 RIMBP3CA6NJZ7 1639 aa15.5■□□□□ 0.07
LETMD1-225ENST00000550715 RIMBP3BA6NNM3 1639 aa15.5■□□□□ 0.07
LETMD1-225ENST00000550715 RIMBP3Q9UFD9 1639 aa15.5■□□□□ 0.07
LETMD1-225ENST00000550715 HMGXB3Q12766 1538 aa15.5■□□□□ 0.07
LETMD1-225ENST00000550715 CYB5RLQ6IPT4 315 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms