RNA–Protein interactions for RNA: ENST00000477152.5

BRCA1-214, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,980 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-214ENST00000477152 AEBP2Q6ZN18 517 aaPredicted RBP21.76■■□□□ 1.07
BRCA1-214ENST00000477152 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
BRCA1-214ENST00000477152 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
BRCA1-214ENST00000477152 SENP3Q9H4L4 574 aaPredicted RBP18.19■□□□□ 0.5
BRCA1-214ENST00000477152 NISCHQ9Y2I1 1504 aa17.94■□□□□ 0.46
BRCA1-214ENST00000477152 PLPPR3Q6T4P5 718 aa17.64■□□□□ 0.41
BRCA1-214ENST00000477152 FOXD1Q16676 465 aa16.97■□□□□ 0.31
BRCA1-214ENST00000477152 PPP6R1Q9UPN7 881 aa16.78■□□□□ 0.28
BRCA1-214ENST00000477152 ADRA2BP18089 450 aa16.77■□□□□ 0.27
BRCA1-214ENST00000477152 CCDC180Q9P1Z9 1646 aa16.2■□□□□ 0.18
BRCA1-214ENST00000477152 ABCC9O60706 1549 aa16.11■□□□□ 0.17
BRCA1-214ENST00000477152 PIAS4Q8N2W9 510 aaPredicted RBP16.08■□□□□ 0.16
BRCA1-214ENST00000477152 KCNA4P22459 653 aa15.92■□□□□ 0.14
BRCA1-214ENST00000477152 PPP4R3CPQ6ZMV5 832 aa15.67■□□□□ 0.1
BRCA1-214ENST00000477152 RB1CC1Q8TDY2 1594 aa15.44■□□□□ 0.06
BRCA1-214ENST00000477152 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
BRCA1-214ENST00000477152 NACADO15069 1562 aa15.32■□□□□ 0.04
BRCA1-214ENST00000477152 MSH5O43196 834 aa15.29■□□□□ 0.04
BRCA1-214ENST00000477152 NCBP3Q53F19 620 aaKnown RBP15.26■□□□□ 0.03
BRCA1-214ENST00000477152 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
BRCA1-214ENST00000477152 DCAF8L2P0C7V8 631 aa15.2■□□□□ 0.02
BRCA1-214ENST00000477152 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
BRCA1-214ENST00000477152 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
BRCA1-214ENST00000477152 MYO15BQ96JP2 1530 aa15.1■□□□□ 0.01
BRCA1-214ENST00000477152 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0.01
BRCA1-214ENST00000477152 CNKSR2Q8WXI2 1034 aa15.06■□□□□ 0
BRCA1-214ENST00000477152 DNAJC5BQ9UF47 199 aa15.02■□□□□ -0
BRCA1-214ENST00000477152 UNC13AQ9UPW8 1703 aa15□□□□□ -0.01
BRCA1-214ENST00000477152 PABPN1Q86U42 306 aaKnown RBP eCLIP14.97□□□□□ -0.01
BRCA1-214ENST00000477152 CSRNP3Q8WYN3 585 aa14.94□□□□□ -0.02
BRCA1-214ENST00000477152 DCAF1Q9Y4B6 1507 aa14.88□□□□□ -0.03
BRCA1-214ENST00000477152 ZCCHC6Q5VYS8 1495 aaKnown RBP14.85□□□□□ -0.03
BRCA1-214ENST00000477152 BICRAQ9NZM4 1560 aa14.85□□□□□ -0.03
BRCA1-214ENST00000477152 SHROOM4Q9ULL8 1493 aa14.82□□□□□ -0.04
BRCA1-214ENST00000477152 ZBTB22O15209 634 aa14.71□□□□□ -0.05
BRCA1-214ENST00000477152 SCRIBQ14160 1630 aa14.66□□□□□ -0.06
BRCA1-214ENST00000477152 RNF216Q9NWF9 866 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-214ENST00000477152 DMRT2Q9Y5R5 561 aa14.62□□□□□ -0.07
BRCA1-214ENST00000477152 CC2D2AQ9P2K1 1620 aa14.58□□□□□ -0.07
BRCA1-214ENST00000477152 CECR2Q9BXF3 1484 aa14.55□□□□□ -0.08
BRCA1-214ENST00000477152 EIF4G1Q04637 1599 aaKnown RBP14.54□□□□□ -0.08
BRCA1-214ENST00000477152 HOXD11P31277 338 aaPredicted RBP14.49□□□□□ -0.09
BRCA1-214ENST00000477152 FOXD4L1Q9NU39 408 aa14.38□□□□□ -0.11
BRCA1-214ENST00000477152 SLC4A2P04920 1241 aa14.29□□□□□ -0.12
BRCA1-214ENST00000477152 NCAPD3P42695 1498 aa14.09□□□□□ -0.15
BRCA1-214ENST00000477152 DCAF8L1A6NGE4 600 aa14.08□□□□□ -0.16
BRCA1-214ENST00000477152 SMARCA2P51531 1590 aa14.06□□□□□ -0.16
BRCA1-214ENST00000477152 SMARCA4P51532 1647 aa14.02□□□□□ -0.17
BRCA1-214ENST00000477152 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
BRCA1-214ENST00000477152 ATAD2BQ9ULI0 1458 aa14.01□□□□□ -0.17
BRCA1-214ENST00000477152 HMGXB3Q12766 1538 aa14.01□□□□□ -0.17
BRCA1-214ENST00000477152 CUX2O14529 1486 aa14□□□□□ -0.17
BRCA1-214ENST00000477152 BAZ1AQ9NRL2 1556 aaPredicted RBP13.98□□□□□ -0.17
BRCA1-214ENST00000477152 DNAJC5Q9H3Z4 198 aa13.96□□□□□ -0.18
BRCA1-214ENST00000477152 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
BRCA1-214ENST00000477152 MYCNP04198 464 aaPredicted RBP13.92□□□□□ -0.18
BRCA1-214ENST00000477152 PEG3Q9GZU2 1588 aa13.89□□□□□ -0.19
BRCA1-214ENST00000477152 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.191e-6■■■□□ 18.6
BRCA1-214ENST00000477152 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.2
BRCA1-214ENST00000477152 NESP48681 1621 aa13.78□□□□□ -0.2
BRCA1-214ENST00000477152 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.2
BRCA1-214ENST00000477152 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
BRCA1-214ENST00000477152 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
BRCA1-214ENST00000477152 ATF5Q9Y2D1 282 aaPredicted RBP13.74□□□□□ -0.21
BRCA1-214ENST00000477152 U3KPZ7 1027 aaPredicted RBP13.72□□□□□ -0.21
BRCA1-214ENST00000477152 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.22
BRCA1-214ENST00000477152 KIF21AQ7Z4S6 1674 aa13.68□□□□□ -0.22
BRCA1-214ENST00000477152 CADPSQ9ULU8 1353 aa13.67□□□□□ -0.22
BRCA1-214ENST00000477152 WIZO95785 1651 aa13.63□□□□□ -0.23
BRCA1-214ENST00000477152 MRC2Q9UBG0 1479 aa13.6□□□□□ -0.23
BRCA1-214ENST00000477152 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
BRCA1-214ENST00000477152 WDR62O43379 1518 aa13.55□□□□□ -0.24
BRCA1-214ENST00000477152 SAMD1Q6SPF0 538 aaPredicted RBP13.52□□□□□ -0.24
BRCA1-214ENST00000477152 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
BRCA1-214ENST00000477152 TOP2AP11388 1531 aaKnown RBP13.5□□□□□ -0.25
BRCA1-214ENST00000477152 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.5□□□□□ -0.25
BRCA1-214ENST00000477152 HNRNPUL2Q1KMD3 747 aaKnown RBP13.5□□□□□ -0.25
BRCA1-214ENST00000477152 CFTRP13569 1480 aa13.49□□□□□ -0.25
BRCA1-214ENST00000477152 RSF1Q96T23 1441 aaPredicted RBP13.49□□□□□ -0.25
BRCA1-214ENST00000477152 FKBP8Q14318 412 aa13.45□□□□□ -0.26
BRCA1-214ENST00000477152 PRDM2Q13029 1718 aa13.44□□□□□ -0.26
BRCA1-214ENST00000477152 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
BRCA1-214ENST00000477152 TRIM41Q8WV44 630 aa13.34□□□□□ -0.27
BRCA1-214ENST00000477152 URB2Q14146 1524 aaKnown RBP13.34□□□□□ -0.27
BRCA1-214ENST00000477152 ABCC8Q09428 1581 aa13.33□□□□□ -0.28
BRCA1-214ENST00000477152 ZNF219Q9P2Y4 722 aaPredicted RBP13.33□□□□□ -0.28
BRCA1-214ENST00000477152 CCDC88BA6NC98 1476 aa13.31□□□□□ -0.28
BRCA1-214ENST00000477152 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
BRCA1-214ENST00000477152 POTEDQ86YR6 584 aa13.29□□□□□ -0.28
BRCA1-214ENST00000477152 SPINK5Q9NQ38 1064 aaPredicted RBP13.28□□□□□ -0.28
BRCA1-214ENST00000477152 RNF39Q9H2S5 420 aa13.25□□□□□ -0.29
BRCA1-214ENST00000477152 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
BRCA1-214ENST00000477152 DNMBPQ6XZF7 1577 aa13.22□□□□□ -0.29
BRCA1-214ENST00000477152 TRHP20396 242 aaPredicted RBP13.21□□□□□ -0.29
BRCA1-214ENST00000477152 APLP2Q06481 763 aa13.18□□□□□ -0.3
BRCA1-214ENST00000477152 ZNF608Q9ULD9 1512 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-214ENST00000477152 EIF4G3O43432 1585 aaKnown RBP13.15□□□□□ -0.3
BRCA1-214ENST00000477152 CAPN15O75808 1086 aa13.12□□□□□ -0.31
BRCA1-214ENST00000477152 RIMBP3CA6NJZ7 1639 aa13.12□□□□□ -0.31
BRCA1-214ENST00000477152 RIMBP3BA6NNM3 1639 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms