RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 AEBP2Q6ZN18 517 aaPredicted RBP12.43□□□□□ -0.42
BRCA1-220ENST00000492859 CHIC1Q5VXU3 224 aa11.83□□□□□ -0.52
BRCA1-220ENST00000492859 POTEDQ86YR6 584 aa10.79□□□□□ -0.68
BRCA1-220ENST00000492859 PHF23Q9BUL5 403 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-220ENST00000492859 SENP3Q9H4L4 574 aaPredicted RBP10.41□□□□□ -0.74
BRCA1-220ENST00000492859 FOXD1Q16676 465 aa9.81□□□□□ -0.84
BRCA1-220ENST00000492859 PLPPR3Q6T4P5 718 aa9.45□□□□□ -0.9
BRCA1-220ENST00000492859 PPP6R1Q9UPN7 881 aa9.35□□□□□ -0.91
BRCA1-220ENST00000492859 ADRA2BP18089 450 aa9.31□□□□□ -0.92
BRCA1-220ENST00000492859 PIAS4Q8N2W9 510 aaPredicted RBP9.16□□□□□ -0.94
BRCA1-220ENST00000492859 MSH5O43196 834 aa9.1□□□□□ -0.95
BRCA1-220ENST00000492859 SLC24A1O60721 1099 aa8.86□□□□□ -0.99
BRCA1-220ENST00000492859 MAPK8IP2Q13387 824 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-220ENST00000492859 PPP4R3CPQ6ZMV5 832 aa8.37□□□□□ -1.07
BRCA1-220ENST00000492859 CACNB1Q02641 598 aaPredicted RBP8.35□□□□□ -1.07
BRCA1-220ENST00000492859 DMRT2Q9Y5R5 561 aa8.31□□□□□ -1.08
BRCA1-220ENST00000492859 SCAF1Q9H7N4 1312 aaKnown RBP8.3□□□□□ -1.08
BRCA1-220ENST00000492859 POTEHQ6S545 545 aa8.22□□□□□ -1.09
BRCA1-220ENST00000492859 CNKSR2Q8WXI2 1034 aa8.12□□□□□ -1.11
BRCA1-220ENST00000492859 EHMT2Q96KQ7 1210 aa8.09□□□□□ -1.11
BRCA1-220ENST00000492859 DAXXQ9UER7 740 aaPredicted RBP8.08□□□□□ -1.12
BRCA1-220ENST00000492859 HOXD11P31277 338 aaPredicted RBP8.05□□□□□ -1.12
BRCA1-220ENST00000492859 DCAF8L1A6NGE4 600 aa8.01□□□□□ -1.13
BRCA1-220ENST00000492859 KCNA4P22459 653 aa8.01□□□□□ -1.13
BRCA1-220ENST00000492859 RNF216Q9NWF9 866 aaPredicted RBP8.01□□□□□ -1.13
BRCA1-220ENST00000492859 NPM3O75607 178 aaKnown RBP8□□□□□ -1.13
BRCA1-220ENST00000492859 NCBP3Q53F19 620 aaKnown RBP7.97□□□□□ -1.13
BRCA1-220ENST00000492859 RTN4Q9NQC3 1192 aaKnown RBP7.89□□□□□ -1.15
BRCA1-220ENST00000492859 TTBK1Q5TCY1 1321 aaPredicted RBP7.84□□□□□ -1.15
BRCA1-220ENST00000492859 MYT1Q01538 1121 aa7.8□□□□□ -1.16
BRCA1-220ENST00000492859 RNF39Q9H2S5 420 aa7.76□□□□□ -1.17
BRCA1-220ENST00000492859 APLP2Q06481 763 aa7.75□□□□□ -1.17
BRCA1-220ENST00000492859 AMER1Q5JTC6 1135 aaPredicted RBP7.74□□□□□ -1.17
BRCA1-220ENST00000492859 PELP1Q8IZL8 1130 aaKnown RBP7.71□□□□□ -1.18
BRCA1-220ENST00000492859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.68□□□□□ -1.181e-6■■■□□ 18.6
BRCA1-220ENST00000492859 PRKCSHP14314 528 aaPredicted RBP7.67□□□□□ -1.18
BRCA1-220ENST00000492859 DNAJC5BQ9UF47 199 aa7.65□□□□□ -1.18
BRCA1-220ENST00000492859 SLC4A2P04920 1241 aa7.64□□□□□ -1.19
BRCA1-220ENST00000492859 ERICH6Q7L0X2 663 aa7.62□□□□□ -1.19
BRCA1-220ENST00000492859 ARXQ96QS3 562 aa7.61□□□□□ -1.19
BRCA1-220ENST00000492859 U3KPZ7 1027 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-220ENST00000492859 C1QBPQ07021 282 aaKnown RBP7.58□□□□□ -1.2
BRCA1-220ENST00000492859 CSRNP3Q8WYN3 585 aa7.55□□□□□ -1.2
BRCA1-220ENST00000492859 SLC4A1APQ9BWU0 796 aaKnown RBP7.51□□□□□ -1.21
BRCA1-220ENST00000492859 SPINK5Q9NQ38 1064 aaPredicted RBP7.49□□□□□ -1.21
BRCA1-220ENST00000492859 TIMELESSQ9UNS1 1208 aa7.48□□□□□ -1.21
BRCA1-220ENST00000492859 ZBTB22O15209 634 aa7.42□□□□□ -1.22
BRCA1-220ENST00000492859 PLSCR2Q9NRY7 297 aa7.42□□□□□ -1.22
BRCA1-220ENST00000492859 CAPN15O75808 1086 aa7.39□□□□□ -1.23
BRCA1-220ENST00000492859 RANGAP1P46060 587 aaPredicted RBP7.37□□□□□ -1.23
BRCA1-220ENST00000492859 TAOK2Q9UL54 1235 aa7.37□□□□□ -1.23
BRCA1-220ENST00000492859 TULP1O00294 542 aaPredicted RBP7.36□□□□□ -1.23
BRCA1-220ENST00000492859 HOMEZQ8IX15 550 aa7.34□□□□□ -1.23
BRCA1-220ENST00000492859 TRHP20396 242 aaPredicted RBP7.33□□□□□ -1.24
BRCA1-220ENST00000492859 DSG3P32926 999 aa7.33□□□□□ -1.24
BRCA1-220ENST00000492859 FOXD4L1Q9NU39 408 aa7.33□□□□□ -1.24
BRCA1-220ENST00000492859 ABCB7O75027 752 aa7.3□□□□□ -1.24
BRCA1-220ENST00000492859 MYCNP04198 464 aaPredicted RBP7.3□□□□□ -1.24
BRCA1-220ENST00000492859 ATF5Q9Y2D1 282 aaPredicted RBP7.3□□□□□ -1.24
BRCA1-220ENST00000492859 BCANQ96GW7 911 aa7.27□□□□□ -1.25
BRCA1-220ENST00000492859 SAMD1Q6SPF0 538 aaPredicted RBP7.25□□□□□ -1.25
BRCA1-220ENST00000492859 KLHL34Q8N239 644 aa7.25□□□□□ -1.25
BRCA1-220ENST00000492859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.23□□□□□ -1.25
BRCA1-220ENST00000492859 EIF5BO60841 1220 aaKnown RBP7.23□□□□□ -1.25
BRCA1-220ENST00000492859 HNRNPUL2Q1KMD3 747 aaKnown RBP7.23□□□□□ -1.25
BRCA1-220ENST00000492859 TPRNQ4KMQ1 711 aa7.22□□□□□ -1.25
BRCA1-220ENST00000492859 ZNF219Q9P2Y4 722 aaPredicted RBP7.2□□□□□ -1.26
BRCA1-220ENST00000492859 PODXL2Q9NZ53 605 aa7.17□□□□□ -1.26
BRCA1-220ENST00000492859 POLA2Q14181 598 aa7.16□□□□□ -1.26
BRCA1-220ENST00000492859 GTF3C3Q9Y5Q9 886 aa7.14□□□□□ -1.27
BRCA1-220ENST00000492859 PLCB2Q00722 1185 aa7.11□□□□□ -1.27
BRCA1-220ENST00000492859 SP7Q8TDD2 431 aaPredicted RBP7.07□□□□□ -1.28
BRCA1-220ENST00000492859 NPM2Q86SE8 214 aaKnown RBP7.03□□□□□ -1.28
BRCA1-220ENST00000492859 HAP1P54257 671 aaPredicted RBP7.02□□□□□ -1.29
BRCA1-220ENST00000492859 ATXN8OSP0DMR3 200 aa7.01□□□□□ -1.29
BRCA1-220ENST00000492859 TMEM132AQ24JP5 1023 aa6.98□□□□□ -1.29
BRCA1-220ENST00000492859 PLEKHG5O94827 1062 aa6.96□□□□□ -1.29
BRCA1-220ENST00000492859 FBXO3Q9UK99 471 aa6.96□□□□□ -1.29
BRCA1-220ENST00000492859 MKRN4PQ13434 485 aaPredicted RBP6.94□□□□□ -1.3
BRCA1-220ENST00000492859 OSCARQ8IYS5 282 aa6.94□□□□□ -1.3
BRCA1-220ENST00000492859 C14orf37Q86TY3 774 aa6.93□□□□□ -1.3
BRCA1-220ENST00000492859 VSIG10Q8N0Z9 540 aa6.91□□□□□ -1.3
BRCA1-220ENST00000492859 TRIM26Q12899 539 aaPredicted RBP6.87□□□□□ -1.31
BRCA1-220ENST00000492859 RBM42Q9BTD8 480 aaKnown RBP6.86□□□□□ -1.31
BRCA1-220ENST00000492859 ZBTB12Q9Y330 459 aaPredicted RBP6.86□□□□□ -1.31
BRCA1-220ENST00000492859 LOC105371045A0A1W2PR82 267 aa6.82□□□□□ -1.32
BRCA1-220ENST00000492859 KDM2AQ9Y2K7 1162 aa6.81□□□□□ -1.32
BRCA1-220ENST00000492859 FBLN2P98095 1184 aa6.8□□□□□ -1.32
BRCA1-220ENST00000492859 HRCP23327 699 aa6.79□□□□□ -1.32
BRCA1-220ENST00000492859 SUPT5HO00267 1087 aaKnown RBP6.78□□□□□ -1.32
BRCA1-220ENST00000492859 REM2Q8IYK8 340 aaPredicted RBP6.78□□□□□ -1.32
BRCA1-220ENST00000492859 BCL11AQ9H165 835 aa6.78□□□□□ -1.32
BRCA1-220ENST00000492859 CHRDL2Q6WN34 429 aa6.78□□□□□ -1.32
BRCA1-220ENST00000492859 AKT1S1Q96B36 256 aa6.78□□□□□ -1.32
BRCA1-220ENST00000492859 DCAF8L2P0C7V8 631 aa6.75□□□□□ -1.33
BRCA1-220ENST00000492859 UBTFP17480 764 aaKnown RBP6.75□□□□□ -1.33
BRCA1-220ENST00000492859 SPDYE2BA6NHP3 402 aa6.73□□□□□ -1.33
BRCA1-220ENST00000492859 PITPNM1O00562 1244 aa6.73□□□□□ -1.33
BRCA1-220ENST00000492859 SPDYE6P0CI01 402 aa6.73□□□□□ -1.33
BRCA1-220ENST00000492859 SPDYE2Q495Y8 402 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 575.8 ms