| NPRL3 | Q12980 | ARC-201 | ENST00000356613 | 2948 nt | APPRIS P1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HMGA2-210 | ENST00000541363 | 8094 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AFAP1-201 | ENST00000358461 | 7516 nt | APPRIS P3 TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | KCNC2-208 | ENST00000549446 | 5625 nt | APPRIS P4 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TGOLN2-205 | ENST00000409232 | 2235 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HOXB4-201 | ENST00000332503 | 3757 nt | APPRIS P1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CGREF1-201 | ENST00000260595 | 1177 nt | APPRIS ALT2 TSL 5 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | SNURF-201 | ENST00000338327 | 331 nt | APPRIS P1 TSL 5 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NEK7-201 | ENST00000367383 | 586 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TSTD1-203 | ENST00000368024 | 457 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CCNL2-202 | ENST00000408918 | 1186 nt | TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | SAPCD1-209 | ENST00000425424 | 820 nt | APPRIS ALT2 TSL 5 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | FAM58CP-201 | ENST00000435741 | 640 nt | BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AL049569.1-201 | ENST00000446261 | 636 nt | TSL 3 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AL365226.1-201 | ENST00000448363 | 349 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AF131215.3-201 | ENST00000532453 | 639 nt | TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | RPL28-209 | ENST00000560055 | 670 nt | TSL 3 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AC087741.1-203 | ENST00000576824 | 820 nt | TSL 3 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | LINC01842-201 | ENST00000588275 | 768 nt | TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CROCCP3-203 | ENST00000589964 | 255 nt | TSL 3 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | INTS14-204 | ENST00000442903 | 1863 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | RPTOR-203 | ENST00000570891 | 2286 nt | TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HOXA-AS2-202 | ENST00000517635 | 2455 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | SAFB-202 | ENST00000454510 | 2650 nt | APPRIS ALT2 TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | GPR137C-201 | ENST00000321662 | 3888 nt | APPRIS P1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | KCTD7-206 | ENST00000639828 | 5951 nt | APPRIS P3 TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | GPS1-227 | ENST00000623761 | 1943 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ETV2-205 | ENST00000479824 | 1342 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ACTL7B-201 | ENST00000374667 | 2379 nt | APPRIS P1 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TBC1D1-219 | ENST00000615497 | 2383 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | POLR2B-205 | ENST00000441246 | 3839 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PHF14-215 | ENST00000634607 | 3407 nt | APPRIS P1 TSL 5 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AC023024.2-201 | ENST00000623561 | 1993 nt | BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CETN1-201 | ENST00000327228 | 1758 nt | APPRIS P1 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | SPATC1-202 | ENST00000447830 | 1795 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TEX264-202 | ENST00000395057 | 1555 nt | APPRIS P3 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PDE7A-203 | ENST00000401827 | 3673 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PAX6-276 | ENST00000640684 | 1557 nt | TSL 5 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NDUFA11-202 | ENST00000418389 | 2406 nt | TSL 2 BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | MECR-201 | ENST00000263702 | 1353 nt | APPRIS P1 TSL 1 (best) BASIC | 14.6 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NBEA-201 | ENST00000310336 | 10794 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NBEA-208 | ENST00000629018 | 10791 nt | APPRIS ALT1 TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HS2ST1-201 | ENST00000370550 | 6736 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | THOC5-203 | ENST00000397872 | 2676 nt | APPRIS P1 TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AC079336.5-201 | ENST00000581360 | 2480 nt | TSL 2 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | BAG4-201 | ENST00000287322 | 4453 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ZNF79-201 | ENST00000342483 | 2078 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | RAP1GAP2-209 | ENST00000637138 | 3175 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | UCKL1-AS1-201 | ENST00000623569 | 3602 nt | BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ATF7-205 | ENST00000548446 | 1892 nt | APPRIS ALT1 TSL 2 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ZNF165-201 | ENST00000377325 | 2107 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CEP170B-203 | ENST00000453495 | 6813 nt | APPRIS ALT2 TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | XRCC1-201 | ENST00000262887 | 2802 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | GATA3-202 | ENST00000379328 | 3078 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | KRT20-201 | ENST00000167588 | 1737 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TACR2-202 | ENST00000373307 | 1740 nt | TSL 2 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CAMKK2-211 | ENST00000538733 | 5175 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NFATC4-213 | ENST00000554591 | 2893 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HIST1H2BD-202 | ENST00000377777 | 496 nt | APPRIS P1 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HCCS-203 | ENST00000380763 | 1000 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AMACR-204 | ENST00000382085 | 1195 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | JMJD7-203 | ENST00000408047 | 1192 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PABPN1L-201 | ENST00000411789 | 873 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AP001062.3-201 | ENST00000422357 | 704 nt | TSL 2 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AL160408.2-201 | ENST00000436039 | 693 nt | TSL 3 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ZFAND2B-212 | ENST00000444522 | 1199 nt | APPRIS P1 TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | DCUN1D5-209 | ENST00000531543 | 1030 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AC126696.3-201 | ENST00000563993 | 575 nt | TSL 4 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | TNFRSF13B-203 | ENST00000579315 | 600 nt | APPRIS ALT2 TSL 3 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | MIR4313-201 | ENST00000580760 | 101 nt | BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PATZ1-203 | ENST00000351933 | 3638 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | WDR45-234 | ENST00000634838 | 1545 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ARHGAP23-221 | ENST00000620417 | 3663 nt | APPRIS ALT2 TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | STRN-202 | ENST00000379213 | 2254 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NCALD-217 | ENST00000521599 | 2289 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | BTBD11-204 | ENST00000420571 | 3478 nt | TSL 5 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PLXNB1-202 | ENST00000358536 | 7308 nt | APPRIS P2 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | RGS3-201 | ENST00000317613 | 2542 nt | TSL 2 BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | E2F3-201 | ENST00000346618 | 4749 nt | APPRIS P3 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | AC018755.2-201 | ENST00000599649 | 1837 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PRPS1-204 | ENST00000372435 | 2073 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | RALGDS-201 | ENST00000372047 | 3598 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NDRG2-203 | ENST00000350792 | 2127 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ELOA-204 | ENST00000613537 | 4924 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | GALNTL6-205 | ENST00000511251 | 2905 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | GRAP-201 | ENST00000284154 | 2651 nt | APPRIS P1 TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | MARK4-202 | ENST00000300843 | 5209 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CHL1-202 | ENST00000397491 | 5235 nt | TSL 1 (best) BASIC | 14.59 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | E2F6-211 | ENST00000542100 | 3450 nt | TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | VLDLR-202 | ENST00000382099 | 3240 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | KATNBL1-201 | ENST00000256544 | 2723 nt | APPRIS P1 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | OSBP2-209 | ENST00000438716 | 2747 nt | APPRIS ALT2 TSL 2 BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | ST3GAL3-208 | ENST00000361392 | 2243 nt | APPRIS P1 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | PHTF1-202 | ENST00000369598 | 3000 nt | TSL 5 BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | CSDC2-201 | ENST00000306149 | 2777 nt | APPRIS P1 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | FER1L4-213 | ENST00000621044 | 2778 nt | TSL 2 BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | HNRNPDL-208 | ENST00000621267 | 4139 nt | APPRIS P2 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | NOS1AP-201 | ENST00000361897 | 4931 nt | APPRIS P3 TSL 1 (best) BASIC | 14.58 | □□□□□ -0.07 | | |
| NPRL3 | Q12980 | DOK5-202 | ENST00000395939 | 1453 nt | TSL 1 (best) BASIC | 14.58 | □□□□□ -0.08 | | |
| NPRL3 | Q12980 | AC073439.1-201 | ENST00000624121 | 1774 nt | BASIC | 14.58 | □□□□□ -0.08 | | |