Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PCDHA3-202ENST00000532566 4594 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AKAP8P1-201ENST00000434743 1349 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC127383.1-201ENST00000444697 1800 ntBASIC12.03□□□□□ -0.48
HLA-DMBP28068 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC243562.1-201ENST00000560672 389 ntBASIC12.03□□□□□ -0.48
HLA-DMBP28068 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HLA-DMBP28068 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.03□□□□□ -0.48
HLA-DMBP28068 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.02□□□□□ -0.48
HLA-DMBP28068 CICP24-201ENST00000605464 2705 ntBASIC12.02□□□□□ -0.48
HLA-DMBP28068 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms