Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SHISA5-216ENST00000494854 1908 ntTSL 1 (best)16.4■□□□□ 0.229e-8■□□□□ 9
LIN28BQ6ZN17 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.34■□□□□ 0.219e-8■□□□□ 9
LIN28BQ6ZN17 SCAMP2-203ENST00000563663 1787 ntTSL 516.33■□□□□ 0.27e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.029e-8■□□□□ 9
LIN28BQ6ZN17 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.88□□□□□ -0.037e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-207ENST00000526549 2375 ntTSL 214.69□□□□□ -0.067e-6■□□□□ 9
LIN28BQ6ZN17 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.167e-6■□□□□ 9
LIN28BQ6ZN17 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC13.78□□□□□ -0.27e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-206ENST00000525243 812 ntTSL 213.71□□□□□ -0.217e-6■□□□□ 9
LIN28BQ6ZN17 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.347e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-213ENST00000466424 673 ntTSL 212.65□□□□□ -0.389e-8■□□□□ 9
LIN28BQ6ZN17 SCAMP2-207ENST00000566480 2476 ntTSL 512.32□□□□□ -0.447e-6■□□□□ 9
LIN28BQ6ZN17 LGR5-206ENST00000550851 4095 ntTSL 211.6□□□□□ -0.557e-6■□□□□ 9
LIN28BQ6ZN17 FNDC3B-206ENST00000443501 678 ntTSL 39.6□□□□□ -0.877e-6■□□□□ 9
LIN28BQ6ZN17 FNDC3B-208ENST00000476794 682 ntTSL 35.48□□□□□ -1.537e-6■□□□□ 9
LIN28BQ6ZN17 SORT1-202ENST00000466471 521 ntTSL 23.43□□□□□ -1.864e-8■□□□□ 9
LIN28BQ6ZN17 FNDC3B-209ENST00000478016 554 ntTSL 43.05□□□□□ -1.927e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.791e-6■□□□□ 9
LIN28BQ6ZN17 ID1-201ENST00000376105 1233 ntBASIC24.37■■□□□ 1.491e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-203ENST00000519857 1668 ntTSL 222.93■■□□□ 1.261e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-214ENST00000528358 600 ntTSL 422.6■■□□□ 1.211e-6■□□□□ 9
LIN28BQ6ZN17 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.061e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.041e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.811e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-210ENST00000526370 575 ntTSL 419.46■□□□□ 0.711e-6■□□□□ 9
LIN28BQ6ZN17 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.591e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.561e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-224ENST00000533100 683 ntTSL 517.91■□□□□ 0.461e-6■□□□□ 9
LIN28BQ6ZN17 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.431e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-206ENST00000456339 887 ntTSL 417.33■□□□□ 0.361e-6■□□□□ 9
LIN28BQ6ZN17 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.15■□□□□ 0.341e-6■□□□□ 9
LIN28BQ6ZN17 ARL10-204ENST00000514533 258 ntTSL 316.87■□□□□ 0.291e-6■□□□□ 9
LIN28BQ6ZN17 HSPG2-201ENST00000374673 538 ntTSL 316.52■□□□□ 0.241e-6■□□□□ 9
LIN28BQ6ZN17 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.21e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.041e-6■□□□□ 9
LIN28BQ6ZN17 NBEAL2-201ENST00000416683 6364 ntTSL 1 (best)15.16■□□□□ 0.021e-6■□□□□ 9
LIN28BQ6ZN17 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.041e-6■□□□□ 9
LIN28BQ6ZN17 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.081e-6■□□□□ 9
LIN28BQ6ZN17 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.131e-6■□□□□ 9
LIN28BQ6ZN17 HSPA14-205ENST00000493178 569 ntTSL 514.23□□□□□ -0.131e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.141e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-213ENST00000495733 3404 ntTSL 213.78□□□□□ -0.21e-6■□□□□ 9
LIN28BQ6ZN17 PPP1CB-201ENST00000296122 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.241e-6■□□□□ 9
LIN28BQ6ZN17 NBEAL2-204ENST00000443829 3508 ntTSL 1 (best)13.36□□□□□ -0.271e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-212ENST00000482914 4834 ntTSL 1 (best)13.25□□□□□ -0.291e-6■□□□□ 9
LIN28BQ6ZN17 HSPA14-202ENST00000437161 1689 ntTSL 2 BASIC13.1□□□□□ -0.311e-6■□□□□ 9
LIN28BQ6ZN17 TPI1-204ENST00000474253 427 ntTSL 1 (best)13.02□□□□□ -0.331e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-211ENST00000552870 595 ntTSL 2 BASIC12.96□□□□□ -0.331e-6■□□□□ 9
LIN28BQ6ZN17 HSPA14-203ENST00000441647 578 ntTSL 312.7□□□□□ -0.381e-6■□□□□ 9
LIN28BQ6ZN17 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.411e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)12.3□□□□□ -0.441e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)11.99□□□□□ -0.491e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.491e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-202ENST00000392508 697 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.651e-6■□□□□ 9
LIN28BQ6ZN17 HSPA14-201ENST00000378372 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.671e-6■□□□□ 9
LIN28BQ6ZN17 KLHL24-205ENST00000454652 7380 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-206ENST00000598016 559 ntTSL 410.02□□□□□ -0.811e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-212ENST00000527834 568 ntTSL 49.55□□□□□ -0.881e-6■□□□□ 9
LIN28BQ6ZN17 DDHD2-218ENST00000529642 358 ntTSL 59.55□□□□□ -0.881e-6■□□□□ 9
LIN28BQ6ZN17 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.931e-6■□□□□ 9
LIN28BQ6ZN17 PABPC4-221ENST00000525751 556 ntTSL 48.85□□□□□ -0.991e-6■□□□□ 9
LIN28BQ6ZN17 PABPC4-223ENST00000529216 317 ntTSL 58.85□□□□□ -0.991e-6■□□□□ 9
LIN28BQ6ZN17 OAT-203ENST00000471127 751 ntTSL 28.59□□□□□ -1.031e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.121e-6■□□□□ 9
LIN28BQ6ZN17 NUP107-209ENST00000538993 836 ntTSL 58.06□□□□□ -1.121e-6■□□□□ 9
LIN28BQ6ZN17 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.141e-6■□□□□ 9
LIN28BQ6ZN17 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC7.65□□□□□ -1.181e-6■□□□□ 9
LIN28BQ6ZN17 GART-215ENST00000482663 616 ntTSL 37.45□□□□□ -1.221e-6■□□□□ 9
LIN28BQ6ZN17 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.96□□□□□ -1.31e-6■□□□□ 9
LIN28BQ6ZN17 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.371e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.21□□□□□ -1.421e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.421e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-203ENST00000468240 2527 ntTSL 26.1□□□□□ -1.431e-6■□□□□ 9
LIN28BQ6ZN17 NDFIP1-203ENST00000505614 547 ntTSL 34.74□□□□□ -1.651e-6■□□□□ 9
LIN28BQ6ZN17 SPDYA-205ENST00000462832 2081 ntTSL 24.7□□□□□ -1.661e-6■□□□□ 9
LIN28BQ6ZN17 DYNLL1-210ENST00000552316 670 nt4.08□□□□□ -1.761e-6■□□□□ 9
LIN28BQ6ZN17 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.86□□□□□ -1.791e-6■□□□□ 9
LIN28BQ6ZN17 PABPC4-217ENST00000492519 323 ntTSL 23.17□□□□□ -1.91e-6■□□□□ 9
LIN28BQ6ZN17 SNRNP200-202ENST00000429650 2637 ntTSL 212.91□□□□□ -0.342e-7■□□□□ 9
LIN28BQ6ZN17 SNRNP200-208ENST00000497539 2666 ntTSL 1 (best)11.63□□□□□ -0.552e-7■□□□□ 9
LIN28BQ6ZN17 APOA2-208ENST00000481413 927 ntTSL 217.6■□□□□ 0.413e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.74■□□□□ 0.273e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-209ENST00000481511 655 ntTSL 514.43□□□□□ -0.13e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-206ENST00000469730 265 ntTSL 512.77□□□□□ -0.373e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-203ENST00000463812 401 ntTSL 2 BASIC10.72□□□□□ -0.693e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-202ENST00000463273 469 ntTSL 1 (best)10.2□□□□□ -0.783e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.593e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.96□□□□□ -1.623e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.14□□□□□ -1.913e-51■□□□□ 9
LIN28BQ6ZN17 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.06□□□□□ -1.923e-51■□□□□ 9
LIN28BQ6ZN17 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.95■■□□□ 1.425e-15■□□□□ 9
LIN28BQ6ZN17 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.05□□□□□ -0.165e-15■□□□□ 9
LIN28BQ6ZN17 RPS6-204ENST00000380394 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.865e-15■□□□□ 9
LIN28BQ6ZN17 ROCK2-201ENST00000261535 1795 ntTSL 523.14■■□□□ 1.299e-16■□□□□ 9
LIN28BQ6ZN17 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.57■□□□□ 0.249e-16■□□□□ 9
LIN28BQ6ZN17 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.332e-8■□□□□ 9
LIN28BQ6ZN17 ROCK2-204ENST00000431087 729 ntTSL 36.28□□□□□ -1.49e-16■□□□□ 9
LIN28BQ6ZN17 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.68□□□□□ -1.989e-16■□□□□ 9
LIN28BQ6ZN17 RPL13-208ENST00000487034 615 ntTSL 1 (best)25.47■■□□□ 1.676e-27■□□□□ 9
LIN28BQ6ZN17 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.52■□□□□ 0.563e-7■□□□□ 9
Retrieved 100 of 21,972 protein–RNA pairs in 409.4 ms