RNA–Protein interactions for RNA: ENST00000374673.3

HSPG2-201, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 3

Gene HSPG2, Length 538 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-201ENST00000374673 NISCHQ9Y2I1 1504 aa36.03■■■■□ 3.36
HSPG2-201ENST00000374673 CCDC180Q9P1Z9 1646 aa31.97■■■□□ 2.71
HSPG2-201ENST00000374673 ABCC9O60706 1549 aa30.84■■■□□ 2.53
HSPG2-201ENST00000374673 ZCCHC6Q5VYS8 1495 aaKnown RBP30.11■■■□□ 2.41
HSPG2-201ENST00000374673 NACADO15069 1562 aa29.93■■■□□ 2.38
HSPG2-201ENST00000374673 MYO15BQ96JP2 1530 aa29.88■■■□□ 2.37
HSPG2-201ENST00000374673 DCAF1Q9Y4B6 1507 aa29.87■■■□□ 2.37
HSPG2-201ENST00000374673 RB1CC1Q8TDY2 1594 aa29.87■■■□□ 2.37
HSPG2-201ENST00000374673 DCAF8L2P0C7V8 631 aa29.83■■■□□ 2.37
HSPG2-201ENST00000374673 UNC13AQ9UPW8 1703 aa29.26■■■□□ 2.27
HSPG2-201ENST00000374673 SCRIBQ14160 1630 aa29.12■■■□□ 2.25
HSPG2-201ENST00000374673 BICRAQ9NZM4 1560 aa28.96■■■□□ 2.23
HSPG2-201ENST00000374673 PABPN1Q86U42 306 aaKnown RBP eCLIP28.82■■■□□ 2.2
HSPG2-201ENST00000374673 SHROOM4Q9ULL8 1493 aa28.72■■■□□ 2.19
HSPG2-201ENST00000374673 EIF4G1Q04637 1599 aaKnown RBP28.16■■■□□ 2.1
HSPG2-201ENST00000374673 CECR2Q9BXF3 1484 aa28.01■■■□□ 2.07
HSPG2-201ENST00000374673 DNAJC5BQ9UF47 199 aa27.97■■■□□ 2.07
HSPG2-201ENST00000374673 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
HSPG2-201ENST00000374673 BAZ1AQ9NRL2 1556 aaPredicted RBP27.92■■■□□ 2.06
HSPG2-201ENST00000374673 SMARCA4P51532 1647 aa27.91■■■□□ 2.06
HSPG2-201ENST00000374673 MROH2BQ7Z745 1585 aa27.76■■■□□ 2.03
HSPG2-201ENST00000374673 PEG3Q9GZU2 1588 aa27.66■■■□□ 2.02
HSPG2-201ENST00000374673 SMARCA2P51531 1590 aa27.65■■■□□ 2.02
HSPG2-201ENST00000374673 ATAD2BQ9ULI0 1458 aa27.64■■■□□ 2.02
HSPG2-201ENST00000374673 NCAPD3P42695 1498 aa27.58■■■□□ 2.01
HSPG2-201ENST00000374673 RSF1Q96T23 1441 aaPredicted RBP27.54■■■□□ 2
HSPG2-201ENST00000374673 HMGXB3Q12766 1538 aa27.51■■■□□ 2
HSPG2-201ENST00000374673 WIZO95785 1651 aa27.5■■□□□ 1.99
HSPG2-201ENST00000374673 BAZ1BQ9UIG0 1483 aaKnown RBP27.43■■□□□ 1.98
HSPG2-201ENST00000374673 TOP2AP11388 1531 aaKnown RBP27.24■■□□□ 1.95
HSPG2-201ENST00000374673 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
HSPG2-201ENST00000374673 CCDC88BA6NC98 1476 aa26.87■■□□□ 1.89
HSPG2-201ENST00000374673 LAMC3Q9Y6N6 1575 aa26.84■■□□□ 1.89
HSPG2-201ENST00000374673 NESP48681 1621 aa26.79■■□□□ 1.88
HSPG2-201ENST00000374673 CADPSQ9ULU8 1353 aa26.78■■□□□ 1.88
HSPG2-201ENST00000374673 CFTRP13569 1480 aa26.71■■□□□ 1.87
HSPG2-201ENST00000374673 PRDM2Q13029 1718 aa26.64■■□□□ 1.85
HSPG2-201ENST00000374673 PDS5BQ9NTI5 1447 aa26.59■■□□□ 1.85
HSPG2-201ENST00000374673 KIF21AQ7Z4S6 1674 aa26.56■■□□□ 1.84
HSPG2-201ENST00000374673 ERCC6Q03468 1493 aa26.55■■□□□ 1.84
HSPG2-201ENST00000374673 FANCD2Q9BXW9 1451 aa26.48■■□□□ 1.83
HSPG2-201ENST00000374673 CEP164Q9UPV0 1460 aa26.42■■□□□ 1.82
HSPG2-201ENST00000374673 THOC2Q8NI27 1593 aaKnown RBP26.39■■□□□ 1.82
HSPG2-201ENST00000374673 MRC2Q9UBG0 1479 aa26.32■■□□□ 1.8
HSPG2-201ENST00000374673 WDR62O43379 1518 aa26.25■■□□□ 1.79
HSPG2-201ENST00000374673 CUX2O14529 1486 aa26.21■■□□□ 1.79
HSPG2-201ENST00000374673 URB2Q14146 1524 aaKnown RBP26.2■■□□□ 1.79
HSPG2-201ENST00000374673 ABCC8Q09428 1581 aa26.13■■□□□ 1.77
HSPG2-201ENST00000374673 DNMBPQ6XZF7 1577 aa26.12■■□□□ 1.77
HSPG2-201ENST00000374673 TOPBP1Q92547 1522 aa26.11■■□□□ 1.77
HSPG2-201ENST00000374673 CUX1P39880 1505 aa26.03■■□□□ 1.76
HSPG2-201ENST00000374673 WRNQ14191 1432 aaPredicted RBP eCLIP25.97■■□□□ 1.75
HSPG2-201ENST00000374673 BIVM-ERCC5R4GMW8 1640 aa25.94■■□□□ 1.74
HSPG2-201ENST00000374673 TOP2BQ02880 1626 aa25.92■■□□□ 1.74
HSPG2-201ENST00000374673 SYNJ1O43426 1573 aa25.91■■□□□ 1.74
HSPG2-201ENST00000374673 POLA1P09884 1462 aaPredicted RBP25.9■■□□□ 1.74
HSPG2-201ENST00000374673 FGD5Q6ZNL6 1462 aa25.88■■□□□ 1.73
HSPG2-201ENST00000374673 IFT140Q96RY7 1462 aa25.86■■□□□ 1.73
HSPG2-201ENST00000374673 TARBP1Q13395 1621 aaKnown RBP25.82■■□□□ 1.72
HSPG2-201ENST00000374673 SOGA1O94964 1423 aa25.77■■□□□ 1.72
HSPG2-201ENST00000374673 RAD54L2Q9Y4B4 1467 aa25.76■■□□□ 1.71
HSPG2-201ENST00000374673 WDR97A6NE52 1622 aa25.74■■□□□ 1.71
HSPG2-201ENST00000374673 ZNF608Q9ULD9 1512 aaPredicted RBP25.68■■□□□ 1.7
HSPG2-201ENST00000374673 ABCA10Q8WWZ4 1543 aa25.67■■□□□ 1.7
HSPG2-201ENST00000374673 EIF4G3O43432 1585 aaKnown RBP25.65■■□□□ 1.7
HSPG2-201ENST00000374673 AQRO60306 1485 aaKnown RBP eCLIP25.57■■□□□ 1.682e-6■■□□□ 14.3
HSPG2-201ENST00000374673 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
HSPG2-201ENST00000374673 ABCA5Q8WWZ7 1642 aa25.56■■□□□ 1.68
HSPG2-201ENST00000374673 TRIM41Q8WV44 630 aa25.52■■□□□ 1.68
HSPG2-201ENST00000374673 GAPVD1Q14C86 1478 aa25.5■■□□□ 1.67
HSPG2-201ENST00000374673 PBRM1Q86U86 1689 aa25.5■■□□□ 1.67
HSPG2-201ENST00000374673 GRIN2BQ13224 1484 aa25.46■■□□□ 1.67
HSPG2-201ENST00000374673 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
HSPG2-201ENST00000374673 KIF27Q86VH2 1401 aa25.39■■□□□ 1.66
HSPG2-201ENST00000374673 ERICH3Q5RHP9 1530 aa25.37■■□□□ 1.65
HSPG2-201ENST00000374673 SNAPC4Q5SXM2 1469 aa25.37■■□□□ 1.65
HSPG2-201ENST00000374673 MAGI1Q96QZ7 1491 aaPredicted RBP25.37■■□□□ 1.65
HSPG2-201ENST00000374673 ADAMTS12P58397 1594 aa25.29■■□□□ 1.64
HSPG2-201ENST00000374673 CHD1O14646 1710 aa25.29■■□□□ 1.64
HSPG2-201ENST00000374673 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
HSPG2-201ENST00000374673 RUSC2Q8N2Y8 1516 aa25.26■■□□□ 1.63
HSPG2-201ENST00000374673 CUL7Q14999 1698 aa25.23■■□□□ 1.63
HSPG2-201ENST00000374673 IGF1RP08069 1367 aa25.23■■□□□ 1.63
HSPG2-201ENST00000374673 FHAD1B1AJZ9 1412 aa25.21■■□□□ 1.63
HSPG2-201ENST00000374673 CHMP7Q8WUX9 453 aaPredicted RBP25.16■■□□□ 1.62
HSPG2-201ENST00000374673 EEA1Q15075 1411 aa25.15■■□□□ 1.62
HSPG2-201ENST00000374673 FBLN2P98095 1184 aa25.14■■□□□ 1.62
HSPG2-201ENST00000374673 GRIN2AQ12879 1464 aa25.14■■□□□ 1.61
HSPG2-201ENST00000374673 OSCARQ8IYS5 282 aa25.11■■□□□ 1.61
HSPG2-201ENST00000374673 CARMIL1Q5VZK9 1371 aa25.09■■□□□ 1.61
HSPG2-201ENST00000374673 NUP160Q12769 1436 aa25.02■■□□□ 1.6
HSPG2-201ENST00000374673 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
HSPG2-201ENST00000374673 CSRNP3Q8WYN3 585 aa25.01■■□□□ 1.59
HSPG2-201ENST00000374673 PRXQ9BXM0 1461 aa25.01■■□□□ 1.59
HSPG2-201ENST00000374673 RAPGEF2Q9Y4G8 1499 aa25.01■■□□□ 1.59
HSPG2-201ENST00000374673 CLASP1Q7Z460 1538 aa25.01■■□□□ 1.59
HSPG2-201ENST00000374673 FAM9AQ8IZU1 332 aaPredicted RBP24.95■■□□□ 1.58
HSPG2-201ENST00000374673 DNAJC5Q9H3Z4 198 aa24.95■■□□□ 1.58
HSPG2-201ENST00000374673 KIF21BO75037 1637 aa24.9■■□□□ 1.58
HSPG2-201ENST00000374673 KIAA0586Q9BVV6 1533 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms